Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human metagenome

ABSTRACT: Nasal Microbiome Samples from NYU-Rutgers Cohort

PROVIDER: PRJNA419002 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6507360.fastq.gz	Fastqsanger.gz
	SRR6507360_1.fastq.gz	Fastqsanger.gz
	SRR6507360_2.fastq.gz	Fastqsanger.gz
	SRR6507370.fastq.gz	Fastqsanger.gz
	SRR6507370_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1692

Similar Datasets

human metagenome

Project description:Nasal Microbiome from the Spanish Aragòn Obstructive Sleep Apnea Cohort

| PRJNA419003 | ENA

Relating human gut metagenome and metaproteome

Project description:Gut microbiome research is rapidly moving towards the functional characterization of the microbiota by means of shotgun meta-omics. Here, we selected a cohort of healthy subjects from an indigenous and monitored Sardinian population to analyze their gut microbiota using both shotgun metagenomics and shotgun metaproteomics. We found a considerable divergence between genetic potential and functional activity of the human healthy gut microbiota, in spite of a quite comparable taxonomic structure revealed by the two approaches. Investigation of inter-individual variability of taxonomic features revealed Bacteroides and Akkermansia as remarkably conserved and variable in abundance within the population, respectively. Firmicutes-driven butyrogenesis (mainly due to Faecalibacterium spp.) was shown to be the functional activity with the higher expression rate and the lower inter-individual variability in the study cohort, highlighting the key importance of the biosynthesis of this microbial by-product for the gut homeostasis. The taxon-specific contribution to functional activities and metabolic tasks was also examined, giving insights into the peculiar role of several gut microbiota members in carbohydrate metabolism (including polysaccharide degradation, glycan transport, glycolysis and short-chain fatty acid production). In conclusion, our results provide useful indications regarding the main functions actively exerted by the gut microbiota members of a healthy human cohort, and support metaproteomics as a valuable approach to investigate the functional role of the gut microbiota in health and disease.

2017-07-19 | PXD005780 | Pride

Human nasal microbiome in health and disease

Project description:Nasal Microbiome Diversity: Insights and Implications from a Lithuanian Cohort Study

| PRJEB70777 | ENA

human metagenome

Project description:Pediatric Microbiome Samples

| PRJNA830888 | ENA

human gut metagenome

Project description:Microbiome study of the IIRN cohort

| PRJNA450540 | ENA

human gut metagenome

Project description:Microbiome study of the RISK cohort

| PRJNA237362 | ENA

human gut metagenome

Project description:Gut and nasal microbiome in Parkinson's disease

| PRJNA381395 | ENA

Single cell RNA sequencing in Staphylococcus epidermidis-inoculated nasal epithelial cells

Project description:We report the application of single cell RNA sequencing technology for high-throughput profiling of nasal microbiome Staphylococcus epidermidis in human nasal epithelial cells.

2021-02-26 | GSE167509 | GEO

Microarray based metatranscriptomics in the human gut microbiome

Project description:Hundreds of microbial species were found to be transcriptionally active in the human gut microbiome based on the expression profiling of ca. 680.000 microbial genes As a part of the MetaHIT cohort 233 human stool samples were transcriptionally profiled using a custom made microarray that included probes for most prevalent microbial genes in the cohort as established by whole-genome sequencing of the same samples

2016-08-01 | E-GEOD-76590 | biostudies-arrayexpress

nasal sample from cattle

Project description:Microbiome of Cattle Nasal Samples

| PRJNA1155197 | ENA