Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

High temporal resolution study of coastal marine microbial communities

ABSTRACT: High temporal resolution study of coastal marine microbial communities Raw sequence reads

PROVIDER: PRJNA420901 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7078140_1.fastq.gz	Fastqsanger.gz
	SRR7078140_2.fastq.gz	Fastqsanger.gz
	SRR7078150_1.fastq.gz	Fastqsanger.gz
	SRR7078150_2.fastq.gz	Fastqsanger.gz
	SRR7078160_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1226

Similar Datasets

Coastal Microbial mats

Project description:Temporal and spatial coastal microbial mat diversity

| PRJNA503134 | ENA

High-temporal resolution profiling of mouse liver

Project description:High-temporal resolution profiling was performed on mouse liver to detect rhythmic transcripts Keywords: time course

2008-10-03 | GSE11923 | GEO

High temporal resolution profiling of U2OS fibroblasts

Project description:High-temporal resolution profiling was performed on U2OS fibroblasts to detect rhythmic transcripts Keywords: time course

2008-12-15 | GSE13949 | GEO

High temporal resolution profiling of NIH3T3 cells

Project description:High-temporal resolution profiling was performed on NIH3T3 fibroblasts to detect rhythmic transcripts Keywords: time course

2008-10-03 | GSE11922 | GEO

High temporal resolution profiling of U2OS fibroblasts

Project description:High-temporal resolution profiling was performed on U2OS fibroblasts to detect rhythmic transcripts Keywords: time course Samples were collected every hour for 48 hours from dexamethasone-synchronized U2OS cells. Cells synchronized with dexamethasone for 24 hours, and harvested from the 24th to 71st hour. Samples were analyzed using Affymetrix arrays.

2008-12-14 | E-GEOD-13949 | biostudies-arrayexpress

Transcription profiling of mouse liver - high temporal resolution

Project description:High-temporal resolution profiling was performed on mouse liver to detect rhythmic transcripts Experiment Overall Design: Samples were collected every hour for 48 hours from 3-5 mice per time point from liver. Samples were pooled and analyzed using Affymetrix arrays.

2008-10-26 | E-GEOD-11923 | biostudies-arrayexpress

High temporal resolution transcriptomic profiling from fertilization through ZGA

Project description:High temporal resolution transcriptomic profiling from fertilization through ZGA

| PRJNA737394 | ENA

Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis

Project description:This SuperSeries is composed of the following subset Series: GSE29642: Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis (time series) GSE39597: Arabidopsis defense against Botrytis cinerea: chronology and regulation deciphered by high-resolution temporal transcriptomic analysis (tga3-2 knockout data) Refer to individual Series

2012-10-03 | E-GEOD-39598 | biostudies-arrayexpress

Plastic microbial communities in coastal ocean

Project description:Strategies to reduce the environmental lifetimes of drinking straws in the coastal ocean

| PRJNA998032 | ENA

Gene Expression in Prokaryotic Microbial Assemblages Across Salinity Gradients in the Columbia River Coastal Margin

Project description:Analysis of microbial gene expression in response to physical and chemical gradients forming in the Columbia River, estuary, plume and coastal ocean was done in the context of the environmental data base. Gene expression was analyzed for 2,234 individual genes that were selected from fully sequenced genomes of 246 prokaryotic species (bacteria and archaea) as related to the nitrogen metabolism and carbon fixation. Seasonal molecular portraits of differential gene expression in prokaryotic communities during river-to-ocean transition were created using freshwater baseline samples (268, 270, 347, 002, 006, 207, 212). Total RNA was isolated from 64 filtered environmental water samples collected in the Columbia River coastal margin during 4 research cruises (14 from August, 2007; 17 from November, 2007; 18 from April, 2008; and 16 from June, 2008), and analyzed using microarray hybridization with the CombiMatrix 4X2K format. Microarray targets were prepared by reverse transcription of total RNA into fluorescently labeled cDNA. All samples were hybridized in duplicate, except samples 212 and 310 (hybridized in triplicate) and samples 336, 339, 50, 152, 157, and 199 (hybridized once). Sample location codes: number shows distance from the coast in km; CR, Columbia River transect in the plume and coastal ocean; NH, Newport Hydroline transect in the coastal ocean at Newport, Oregon; AST and HAM, Columbia River estuary locations near Astoria (river mile 7-9) and Hammond (river mile 5), respectively; TID, Columbia River estuary locations in the tidal basin (river mile 22-23); BA, river location at Beaver Army Dock (river mile 53) near Quincy, Oregon; UP, river location at mile 74.

2010-09-10 | E-GEOD-18303 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data