Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Jasper Ridge Global Change Experiment (JRGCE)

PROVIDER: PRJNA422013 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6367530.fastq.gz	Fastqsanger.gz
	SRR6367540.fastq.gz	Fastqsanger.gz
	SRR6367550.fastq.gz	Fastqsanger.gz
	SRR6367560.fastq.gz	Fastqsanger.gz
	SRR6367570.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

Jasper Ridge Global Change Experiment

Project description:Jasper Ridge Global Change Experiment

| PRJNA419199 | ENA

soil metagenome

Project description:Jasper Ridge Global Change Experiment (JRGCE)

| PRJNA419455 | ENA

The microbial taxonomic and functional compositions at the Jasper Ridge Global Change Experiment

Project description:The microbial taxonomic and functional compositions at the Jasper Ridge Global Change Experiment

| PRJNA523166 | ENA

The microbial taxonomic and functional compositions at the Jasper Ridge Global Change Experiment

Project description:Fire is a crucial event regulating the structure and functioning of many ecosystems. Yet few studies focused on how fire affects both the taxonomic and functional diversity of soil microbial communities, along with plant diversity and soil carbon (C) and nitrogen (N) dynamics. Here, we analyze these effects for a grassland ecosystem 9-months after an experimental fire at the Jasper Ridge Global Change Experiment (JRGCE) site in California, USA. Fire altered soil microbial communities considerably, with community assembly process analysis indicating that environmental selection pressure was higher in burned sites. However, a small subset of highly connected taxa were able to withstand the disturbance. In addition, fire decreased the relative abundances of most genes associated with C degradation and N cycling, implicating a slow-down of microbial processes linked to soil C and N dynamics. In contrast, fire stimulated plant growth, likely enhancing plant-microbe competition for soil inorganic N. To synthesize our findings, we performed structural equation modeling, which showed that plants but not microbial communities were responsible for the significantly higher soil respiration rates in burned sites. In conclusion, fire is well-documented to considerable alter the taxonomic and functional composition of soil microorganisms, along with the ecosystem functioning, thus arousing feedback of ecosystem responses to affect global climate.

2022-02-19 | GSE126737 | GEO

Project description:Soil fungal communities collected from a long-term global change experiment

| PRJNA1027485 | ENA

JASPer controls interphase H3S10 phosphorylation by chromosomal kinase JIL-1 in Drosophila (Spike-in ChIP-seq experiments)

Project description:In flies, the chromosomal kinase JIL-1 is responsible for most interphase H3S10 phosphorylation and has been proposed to protect active chromatin from acquiring heterochromatic marks like H3K9me2 and HP1. Here, we show that JIL-1’s targeting to chromatin depends on a new PWWP domain containing protein JASPer (JIL-1 Anchoring and Stabilizing Protein). The JASPer/JIL-1 (JJ)-complex is the major form of the kinase in vivo and is targeted to active genes and telomeric transposons via binding of the PWWP domain of JASPer to H3K36me3 nucleosomes. Put in place, the complex modulates the transcriptional output. JIL-1 and JJ-complex depletion in cycling cells induce small changes in H3K9me2 distribution at active genes and telomeric transposons. Finally, we identified many new interactors of the endogenous JJ-complex and propose that JIL-1 not only prevents heterochromatinisation, but also coordinates chromatin based regulation in the transcribed part of the genome.

2019-09-19 | GSE130112 | GEO

JASPer controls interphase H3S10 phosphorylation by chromosomal kinase JIL-1 in Drosophila (Sonication ChIP-seq experiments)

2019-09-19 | GSE128456 | GEO

JASPer controls interphase H3S10 phosphorylation by chromosomal kinase JIL-1 in Drosophila (MNase ChIP-seq experiments)

2019-09-19 | GSE128455 | GEO

Project description:Global change microbes

| PRJNA891744 | ENA