Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhizosphere metagenome

ABSTRACT: archaea, bacteria and fungi Genome sequencing

PROVIDER: PRJNA422480 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6377670.fastq.gz	Fastqsanger.gz
	SRR6377680.fastq.gz	Fastqsanger.gz
	SRR6377690.fastq.gz	Fastqsanger.gz
	SRR6377700.fastq.gz	Fastqsanger.gz
	SRR6377710.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 120

Similar Datasets

Intestinal microbiome cohort study of colorectal cancer

Project description:Interventions: ntestinal polyp gruop and colorectal cancer gruop:Nil Primary outcome(s): bacteria;fungi;archaea;virus Study Design: Factorial

| 2704346 | ecrin-mdr-crc

rhizosphere metagenome

Project description:The diversity of bacteria and archaea of Suaeda rhizosphere soil

| PRJNA762470 | ENA

freshwater metagenome

Project description:Environmental bacteria, fungi and archaea Targeted loci environmental

| PRJNA280508 | ENA

rhizosphere metagenome

Project description:Lettuce rhizosphere (bacteria and fungi) - chitin Targeted Locus (Loci)

| PRJNA294362 | ENA

Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber

Project description:The rumen harbors a complex mixture of archaea, bacteria, protozoa and fungi that efficiently breakdown plant biomass and its complex dietary carbohydrates into soluble sugars that can be fermented and subsequently converted into metabolites and nutrients utilized by the host animal. While rumen bacteria populations have been well documented, only a fraction of the rumen eukarya are taxonomically and functionally characterized, despite the recognition that they contribute to the cellulolytic phenotype of the rumen fauna. To investigate how anaerobic fungi actively engage in digestion of recalcitrant fiber that is resistant to the initial stages of rumination, we resolved genome-centric metaproteome and metatranscriptome datasets generated from switchgrass samples incubated in nylon bags within the rumen of cannulated dairy cows for 48 hours.

2020-10-14 | PXD017007 | Pride

soil metagenome

Project description:Comprehensive metabarcoding analysis for archaea, bacteria, fungi and nematodes

| PRJDB14524 | ENA

A single-base resolution map of an archaeal transcriptome

Project description:Organisms of the third domain of life, the Archaea, share molecular characteristics both with bacteria and eukarya. These organisms attract scientific attention as research models for regulation and evolution of processes such as transcription, translation and RNA processing. We have reconstructed the primary transcriptome of Sulfolobus solfataricus P2, one of the most widely studied model archaeal organisms. Analysis of 625 million bases of sequenced cDNAs yielded a single-bp resolution map of transcription start sites and operon structures for more than 1000 transcriptional units. The analysis led to the discovery of 310 expressed non-coding RNAs, with an extensive expression of overlapping cis-antisense transcripts to a level unprecedented in any bacteria or archaea but resembling that of eukaryotes. As opposed to bacterial transcripts, most Sulfolobus transcripts completely lack 5' UTR sequences, suggesting that mRNA/ncRNA interactions differ between bacteria and archaea. The data also reveal internal hotspots for transcript cleavage linked to RNA degradation, and predict sequence motifs that promote RNA destabilization. This study emphasizes the importance of transcriptome sequencing as a key tool for understanding the mechanisms and extent of RNA-based regulation for bacteria and archaea. 5 samples of cDNA sequencing (2 of these are replicates), and 3 samples of RACE-cDNA sequencing (described in the samples section).

2009-10-21 | E-GEOD-18630 | biostudies-arrayexpress

rhizosphere metagenome

Project description:Consortia of anti-nematode fungi and bacteria in a soybean field

| PRJDB7012 | ENA

Soil Microorganisms in Antimony Mining Area

Project description:Bacteria, fungi and archaea Raw sequence reads

| PRJNA930178 | ENA

rhizosphere metagenome

Project description:antibiotics-fungi

| PRJNA392787 | ENA