Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gymnodraco acuticeps

ABSTRACT: Gymnodraco acuticeps transcriptome and gene expression

PROVIDER: PRJNA422913 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6450835_1.fastq.gz	Fastqsanger.gz
	SRR6450835_2.fastq.gz	Fastqsanger.gz
	SRR6450836_1.fastq.gz	Fastqsanger.gz
	SRR6450836_2.fastq.gz	Fastqsanger.gz
	SRR6450837_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Gymnodraco acuticeps

Project description:Gymnodraco acuticeps Raw sequence reads

| PRJNA834907 | ENA

Gymnodraco acuticeps

Project description:Gymnodraco acuticeps Raw sequence reads

| PRJNA835978 | ENA

Gymnodraco acuticeps

Project description:Gymnodraco acuticeps Raw sequence reads

| PRJNA835673 | ENA

Gymnodraco acuticeps

Project description:Gymnodraco acuticeps Raw sequence reads

| PRJNA835975 | ENA

fGymAcu1

Project description:Gymnodraco acuticeps (ploughfish)

| PRJEB37640 | ENA

Isolation and characterization of the mitochondrial genome of <i>Gymnodraco acuticeps</i> (Perciformes: Bathydraconidae) with phylogenetic consideration.

Project description:Gymnodraco acuticepsis is an Antarctic fish living in the Southern Ocean. Until now, studies on G. acuticeps are still limited. As an Antarctic fish, obtaining and characterization of the mitochondrial genome of G. acuticeps will be important for elucidation of the mechanism of cold-adapting evolution in mitochondrion. In this study, we first isolated and characterized the mitochondrial genome sequence of G. acuticeps with 15,987?bp in length. It contained of 34 genes (12 protein-coding genes, 20 transfer RNA genes, 2 ribosomal RNA genes) and a partial putative control region. Gene organization and nucleotide composition of obtained mito-genome were similar to those of other Antarctic fish. Twenty-eight genes were encoded by heavy strand, while six genes were encoded by light strand. Further, the phylogenetic tree, which based on 12 protein-coding genes, revealed that the G. acuticeps was genetically closest to species Parachaenichthys charcoti among 18 species. We hope this work would be helpful for the population genetics and molecular evolution studies.

| S-EPMC7799673 | biostudies-literature

fGymAcu1

Project description:Gymnodraco acuticeps (ploughfish) genome assembly, fGymAcu1

| PRJEB37639 | ENA

fGymAcu1 alternate haplotype

Project description:Gymnodraco acuticeps (ploughfish) genome assembly, fGymAcu1, alternate haplotype

| PRJEB37638 | ENA

Evolutionary suppression of erythropoiesis via the modulation of TGF-β signaling in an Antarctic icefish

Project description:The Antarctic icefish, a family (Channichthyidae) of teleosts within the perciform suborder Notothenioidei, are the only known vertebrates without oxygen-transporting hemoglobins and that are largely devoid of circulating erythrocytes. To elucidate the evo-devo mechanisms underpinning the suppressed erythropoiesis in the icefish, we conducted comparative studies on the transcriptomes and microRNAomes of the primary hematopoietic tissues between an icefish (Chionodraco hamatus) and two red-blooded notothenioids (Trematomus bernacchii and Gymnodraco acuticeps). We identified substantial remodeling of the hematopoietic programs in the icefish through which erythropoiesis is selectively suppressed. Experimental verification showed that erythropoietic suppression in the icefish may be attributable to the upregulation of TGF-β signaling, which coincides with reductions in multiple transcription factors essential for erythropoiesis and the upregulation of hundreds of microRNAs, the majority (> 80%) of which potentially target erythropoiesis regulating factors.

2015-10-14 | GSE70113 | GEO

Dissostichus mawsoni (Antarctic toothfish) and Gymnodraco acuticeps (Antarctic dragonfish)

Project description:Comparative Study Revealed Nucleotide and Amino Acid Preference in Polar Fishes

| PRJNA301149 | ENA