Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq sequencing of the transgenic plants seeds and leaves

ABSTRACT: RNA-seq sequencing of the transgenic plants seeds and leaves

PROVIDER: PRJNA427907 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6429850_1.fastq.gz	Fastqsanger.gz
	SRR6429850_2.fastq.gz	Fastqsanger.gz
	SRR6429860_1.fastq.gz	Fastqsanger.gz
	SRR6429860_2.fastq.gz	Fastqsanger.gz
	SRR6429851_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

RNA-seq sequencing of the transgenic plants seeds

Project description:RNA-seq sequencing of the transgenic plants seeds

| PRJNA427912 | ENA

RNA-seq sequencing of the transgenic plants seeds

Project description:To analyze influence of ZmDWF4 on seed development, we we chose 10DAP and 15DAP from the transgenic line L100 seed to RNA-seq sequence. Total RNA was extracted from the seeds (10 days after pollination, 10DAP, 15 days after of pollination,15DAP) of transgenic line L100 and wild type Q319. cDNA library was builded in the BIOMARKER, original reads were sequenced based on Illumina HiSeq2000, and through rRNA, low quality fragment DNA of filtering, ultimately, we obtained 99.30Gb high quality clean reads. Compared with reference gene sequence(AGPv3), according to genes function annotation, we found 463, 675 different expression genes, respectively.We classified the different expression genes according to Cellular Component, Molecular Function and Biological Process. It showed that BRs could affect many genes expression involved in different biological process in the seed development.

2018-12-27 | GSE108628 | GEO

RNA-seq sequencing of the transgenic plants leaves at the six-leaf stage

Project description:To know BRs was how to cause transgenic line L100 leaves changed, we took the sixth leaves of transgenic line L100 to RNA-seq sequence. Total RNA was extracted from the sixth leaves of six-leaf stage of transgenic line L100 and wild type Q319. cDNA library was builded in the BIOMARKER, 100.20M original reads were sequenced based on Illumina HiSeq2000, and through rRNA, low quality fragment DNA of filtering, ultimately, we obtained 69.01M high quality clean reads. Compared with reference gene sequence(AGPv3), according to genes function annotation, we found 201 different expression genes. We classified the different expression genes according to Cellular Component, Molecular Function and Biological Process. It showed that BRs could affect many genes expression involved in different biological process.

2018-12-27 | GSE108627 | GEO

RNA-seq sequencing of the transgenic plants leaves at the six-leaf stage

Project description:RNA-seq sequencing of the transgenic plants leaves at the six-leaf stage

| PRJNA427911 | ENA

RNA-seq sequencing of the transgenic plants seeds and leaves

Project description:This SuperSeries is composed of the SubSeries listed below.

2018-12-27 | GSE108630 | GEO

RNA-seq analysis of dark-induced senescence of the leaves of Ran-GDP and Ran-GTP overexpression transgenic plants

Project description:Comparing transcriptome of the leaves of Ran-GDP and Ran-GTP overexpression transgenic plants before and after dark incubation, we discovered 851 differentially expressed genes that designated as Ran-regulated genes. The RNA-seq result confirmed the early senescence phenotype of Ran-GTP overexpression plants and the up-regulation of several signaling pathways, implied their positive roles in Ran-regulated senescence and suggest potential downstream targets of Ran. This study provided a mechanism that senescence process could be regulated by nuclear transportation machinery in Arabidopsis.

2021-04-27 | GSE173375 | GEO

RNA-seq datasets of OsRDR3 transgenic plants.

Project description:RNA-seq datasets of OsRDR3 transgenic plants.

| PRJNA473574 | ENA

Next Generation Sequencing Quantitative Analysis of soybean seeds Transcriptomes

Project description:To investigate the regulatory mechanisms of GmNFYA in salt stress, leaves and roots of transgenic plants and JACK plants were collected for RNA extraction and sequencing. Clean reads of RNA-sequencing were mapped to soybean genome and genes that had a 2 fold increase or 50% decrease, compared to JACK, were defined as differential expressed genes (DEGs).

2021-05-01 | GSE173640 | GEO

Detection and Characterization of Gene Expression Differences in Transgenic Glycine max Seeds with RNAseq

Project description:Transformation of Glycine max with seed-targeted expression vectors via Agrobacterium causes measurable unscripted gene expression changes in the seed transcriptome Overall design: mRNA was sequenced from three transgenic events expressing three different recombinant proteins in soybean seeds. Three plants were chosen from each as group replicates, and three seeds from each plant as individual biological replicates.

2015-10-06 | E-MTAB-4317 | biostudies-arrayexpress

RNA-Seq of silenced MYB123 stable transgenic plants

Project description:RNA-Seq of silenced MYB123 stable transgenic plants

| PRJNA635423 | ENA