Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fungi

ABSTRACT: ITS2 region of fungal species on amphibian skin swabs Raw sequence reads

PROVIDER: PRJNA429422 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6480820_1.fastq.gz	Fastqsanger.gz
	SRR6480820_2.fastq.gz	Fastqsanger.gz
	SRR6480830_1.fastq.gz	Fastqsanger.gz
	SRR6480830_2.fastq.gz	Fastqsanger.gz
	SRR6480840_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

Survival, gene and metabolite responses of Litoria verreauxii alpina frogs to fungal disease chytridiomycosis

Project description:The fungal skin disease chytridiomycosis has caused the devastating decline and extinction of hundreds of amphibian species globally, yet the potential for evolving resistance, and the underlying pathophysiological mechanisms remain poorly understood. We exposed 406 naïve, captive-raised alpine tree frogs (Litoria verreauxii alpina) to the aetiological agent Batrachochytrium dendrobatidis in two concurrent and controlled infection experiments. We investigated (A) survival outcomes and clinical pathogen burdens between populations and clutches, and (B) individual host tissue responses to chytridiomycosis. Here we present multiple interrelated datasets associated with these exposure experiments, including animal signalment, survival and pathogen burden of 355 animals from Experiment A, and the following datasets related to 61 animals from Experiment B: animal signalment and pathogen burden; raw RNA-Seq reads from skin, liver and spleen tissues; de novo assembled transcriptomes for each tissue type; raw gene expression data; annotation data for each gene; and raw metabolite expression data from skin and liver tissues. These data provide an extensive baseline for future analyses.

2018-01-09 | MTBLS457 | MetaboLights

Uncultured ITS1 fungal sequence reads from amphibian skin swabs

Project description:Uncultured ITS1 fungal sequence reads from amphibian skin swabs Raw sequence reads

| PRJNA516413 | ENA

Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species

Project description:Amphibian populations around the world are threatened by an emerging infectious pathogen, the chytrid fungus Batrachochytrium dendrobatidis (Bd). How can a fungal skin infection kill such a broad range of amphibian hosts? And why are certain species particularly susceptible to the impacts of Bd? Here we use a genomics approach to understand the genetic response of multiple susceptible frog species to Bd infection. We characterize the transcriptomes of two closely-related endangered frog species (Rana muscosa and Rana sierrae) and analyze whole genome expression profiles from frogs in controlled Bd-infection experiments. We integrate the Rana results with a comparable dataset from a more distantly-related susceptible species (Silurana tropicalis). We demonstrate that Bd-infected frogs show massive disruption of skin function and show no evidence of a robust immune response. The genetic response to infection is shared across the focal susceptible species, suggesting a common effect of Bd on susceptible frogs. A total of five (12-plex) chips were analyzed from 60 samples comprising 2 conditions (control and infected), 3 tissues (skin, liver and spleen) and 2 timepoints (early and late). Three biological replicates were used for each condition and tissue at each time point. Twentyfour arrays were analyzed for skin samples, 24 for liver, and 12 for spleen. The same dye, Cy5, was used for all samples.

2012-04-30 | E-GEOD-34235 | biostudies-arrayexpress

fungi

Project description:soil fungal DNA-ITS2 amplicon sequencing

| PRJNA419101 | ENA

Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species

2012-05-01 | GSE34235 | GEO

fungi

Project description:fungal Raw sequence reads

| PRJNA892384 | ENA

Fungi

Project description:Fungal ITS2-Inferred Rhizobiome Chestnut Breedinglines in Vallonia Nursery

| PRJNA432081 | ENA