Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: AnMBR effect of salinity increases Raw sequence reads

PROVIDER: PRJNA429747 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6467140_1.fastq.gz	Fastqsanger.gz
	SRR6467140_2.fastq.gz	Fastqsanger.gz
	SRR6467141_1.fastq.gz	Fastqsanger.gz
	SRR6467141_2.fastq.gz	Fastqsanger.gz
	SRR6467142_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

AnMBR samples

Project description:AnMBR samples Raw sequence reads

| PRJNA866882 | ENA

BioXtreme

Project description:Salinity fluctuations in AnMBR

| PRJEB38420 | ENA

Epigenetic regulation during salinity stress response in chickpea (WGBS)

Project description:Bisulphite sequencing of salinity sensitive and salinity tolerant chickpea genotypes during salinity stress response using Illumina platform has been performed. At least 195 million reads in bisulphite sequencing were generated in each sample. Methylated cytosines in each sample were identified for their genomic location and sequence context.

2023-02-15 | GSE204729 | GEO

Thermophilic AnMBR treating phenol at high salinity

Project description:Thermophilic AnMBR at high salinity

| PRJEB38467 | ENA

Project description:AnMBR meso- to thermophilic transition Raw sequence reads

| PRJNA391391 | ENA

Control and Experimental AnMBR samples

Project description:Control and Experimental AnMBR samples Raw sequence reads

| PRJNA842159 | ENA

Exploring the gene expression profile upon FXR1 knockdown in H358 cells using RNA-seq

Project description:We performed the RNA-seq in control samples and FXR1 knockdown samples, and compared the gene expression profiles to explore the effect of FXR1 knockdown on gene expression. The study was performed in H358 cells. Doxycycline inducible shRNA3 (sh3) was used to knockdown FXR1. Control shRNA (ctrl) samples were used to get rid of the effect of Doxycycline treatment. Both the Doxycycline treament for 3 days (D3) and 5 days (D5) samples were collected. Each sample has three repeats (rep 1, rep 2, and rep 3). The mRNA profiles were generated by deep sequencing using Illumina.Sequenced reads were trimmed for adaptor sequence, then mapped to hg19 whole genome using STAR v2.5.3 with parameters --bamRemoveDuplicatesType UniqueIdentical --outSAMmultNmax 1. Raw reads and Reads Per Kilobase per Megabase of library size (RPKM) were calculated using HOMER (PMID: 20513432). Differential gene expression was analyzed using R package DESeq2 using the raw reads.

2017-10-04 | GSE101754 | GEO

activated sludge metagenome

Project description:salinity bacteria Raw sequence reads

| PRJNA295444 | ENA

UASB and AnMBR bioreactor microbial communities

Project description:UASB and AnMBR bioreactor microbial communities Raw sequence reads

| PRJNA473801 | ENA