Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA-seq analysis of kdm5 null mutant wing discs

ABSTRACT: RNA-seq analysis of kdm5 null mutant wing discs

PROVIDER: PRJNA430100 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6495600_1.fastq.gz	Fastqsanger.gz
	SRR6495600_2.fastq.gz	Fastqsanger.gz
	SRR6495601_1.fastq.gz	Fastqsanger.gz
	SRR6495601_2.fastq.gz	Fastqsanger.gz
	SRR6495602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

RNA-seq analysis of kdm5 null mutant wing discs

Project description:In order to determine which genes were affected by the complete loss of kdm5, we carried out RNA-seq analysis using wing discs from wildtype and kdm5 140, the new null mutant. Consistent with the phenotypes observed, transcriptome analyses of kdm5140 mutant wing imaginal discs revealed the dysregulation of a significant number of genes involved in cell cycle progression and DNA repair.

2019-12-31 | GSE109201 | GEO

The gene expression changes associated with loss of KDM5 (lid) in Drosophila wing discs

Project description:To determine the gene expression changes associated with loss of KDM5, we carried out microarray analyses of dissected wing imaginal discs from wildtype (w1118) and kdm510424 homozygous mutant 3rd instar larvae (96hr AED). kdm510424 is >99% homozygous lethal and we are unable to detect KDM5 protein by Western blot, thus it is likely to be a strong loss-of-function allele. Hierarchical cluster analysis of our microarray data revealed that of the 18,500 transcripts represented on the array, 367 genes were up-regulated and 534 genes were down-regulated 1.5-fold or more in kdm5 mutants compared to wildtype (p<0.05). To highlight biological processes potentially regulated by KDM5, we determined which gene ontology (GO) terms were enriched within the differentially expressed genes. While a total of ten GO terms were significantly enriched (p<0.01), two functionally related and overlapping terms clearly had the largest number of genes: (1) response to stress and (2) oxidation reduction.

2014-12-31 | GSE53881 | GEO

Single-cell transcriptomic analysis of the scrib mutant wing imaginal discs

Project description:Investigation of intratumor heterogeneity in the scrib¹ mutant wing imaginal discs. Method: Staged scrib¹ wing imaginal discs were dissected and transferred to DPBS. The wing imaginal discs were dissociated in 0.25% Trypsin-EDTA solution at 37 ℃ for 10 min. Cells were then washed in DPBS and passed through 35μm filter before library preparation. Construction of 10x single cell libraries and sequencing on Illumina platform were performed by Novogene.

2019-08-27 | GSE130566 | GEO

Gene expression profiles of null Pacman/Xrn1 mutant Drosophila L3 wing imaginal discs

Project description:Two pcm null alleles (pcm14 and pcm15) were sequenced alongside respective wild-type controls (wild-type 1 and wild-type 2). Each genotype was replicated 3 times. Read depth was 12-17 million reads per replicate. Total RNA was prepared from Drosophila L3 larval wing imaginal discs.

2016-07-03 | E-MTAB-3789 | biostudies-arrayexpress

Gene expression profiles of null Pacman/Xrn1 mutant Drosophila L3 wing imaginal discs

Project description:Gene expression profiles of null Pacman/Xrn1 mutant Drosophila L3 wing imaginal discs

| PRJEB10035 | ENA

RNA-seq expression analysis of control and Myb mutant wing discs

Project description:Study of genome-wide differential gene expression of Drosophila Melanogaster Myb mutant wing discs of 3rd instar larvae compared to control animals.

2020-03-12 | GSE138373 | GEO

RNA expression in wild-type and Nipped-B heterozygous mutant Drosophila third instar imaginal wing discs

Project description:RNA expression in wild-type and Nipped-B heterozygous mutant wing discs was quantified by RNA-seq and compared

2015-10-21 | GSE74192 | GEO

Gene expression profiling of Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae. [NimbleGenGeneExpression-12plex]

Project description:Study of genome-wide differential gene expression of Drosophila Melanogaster Myb mutant wing discs of 3rd instar larvae compared to control animals.

2020-03-12 | GSE100142 | GEO

Gene expression profiling of Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae. [NimbleGen tiling array]

Project description:Study of genome-wide expression of Drosophila Melanogaster Myb mutant wing discs of 3rd instar larvae compared to control animals.

2020-03-12 | GSE100141 | GEO

Genome-wide analysis of RNA polymerase in Drosophila melangoaster Myb mutant wing discs of 3rd instar larvae.

Project description:Study of genomic distribution of RNA polymerase in Drosophila melanogaster Myb mutant wing discs of 3rd instar larvae compared to control animals.

2020-03-12 | GSE100138 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data