Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Begonia x semperflorens-cultorum breed:“Super Olympia” Begonia semperflorens

ABSTRACT: Begonia x semperflorens-cultorum breed:“Super Olympia” Begonia semperflorens Genome sequencing and assembly

PROVIDER: PRJNA431030 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6489410_1.fastq.gz	Fastqsanger.gz
	SRR6489410_2.fastq.gz	Fastqsanger.gz
	SRR6489409_1.fastq.gz	Fastqsanger.gz
	SRR6489409_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

Begonia x semperflorens-cultorum

Project description:Begonia x semperflorens-cultorum overview

| PRJNA328291 | ENA

Begonia x semperflorens-cultorum

Project description:begonia semperflorens Genome sequencing and assembly

| PRJNA320938 | ENA

Begonia x semperflorens-cultorum cultivar:Super Olympia

Project description:Begonia semperflorens Genome sequencing and assembly

| PRJNA327279 | ENA

Begonia x semperflorens-cultorum

Project description:Begonia x semperflorens-cultorum Transcriptome or Gene expression

| PRJNA431881 | ENA

Begonia x semperflorens-cultorum

Project description:Begonia x semperflorens-cultorum Genome sequencing and assembly

| PRJNA327269 | ENA

Transcriptome analysis of the biosynthesis of anthocyanins in Begonia semperflorens under low-temperature and high-light conditions

Project description:Anthocyanins are considered as a stress indicator due to their involvement in the response to many stresses including high light (HL) and low temperature (LT). With the development of transcriptomics, it is necessary to find the different and common points in the mechanisms of LT-induced and HL-induced anthocyanin biosynthesis . In the present study, we determined the transcriptomes of Begonia semperflorens leaves under three different conditions (CK, HL and LT). To validate the DEGs, we selected four core genes involved in anthocyanin biosynthesis to perform RT-qPCR, and then determined anthocyanin content. In total, 94,880 unigenes with a mean length of 635 bp were assembled. The N50 values of the transcripts and unigenes were 2,286 bp and 1,064 bp, respectively. The functional annotations of the unigenes were analysed against five protein databases. DEGs related to anthocyanin biosynthesis, transportation and regulation were identified. We also analysis the enrichment pathway, and discuss the difference in mechanisms of anthocyanin induced under low-emperature and high-light conditions. This study is the first to examine broad-scale gene expression in B. semperflorens. By identifying DEGs regulated by both LT and HL conditions, we found that anthocyanin accumulation was employed as a common strategy by Begonia seedlings in resisting LT and HL stress. By identifying DEGs regulated differently by LT and HL conditions, we found that Begonia seedlings also had some different strategies for resisting LT and HL stresses: anthocyanins were biosynthesized under HL condition, while lignin, proanthocyanidins and anthocyanins under LT condition.

2017-12-08 | GSE107805 | GEO

Begonia

Project description:Begonia bipinnatifidia, Begonia trichopoda, Begonia serratipetala Targeted loci

| PRJNA552424 | ENA

Begonia socotrana breed:Begonia socotrana, Begonia samhaensis

Project description:Is mutational meltdown a threat to the mega diverse genus Begonia?

| PRJNA690529 | ENA

Begonia

Project description:Begonia speciation project

| PRJNA80387 | ENA

Transcriptome analysis of the biosynthesis of anthocyanins in Begonia semperflorens under low-temperature and high-light conditions

Project description:Transcriptome analysis of the biosynthesis of anthocyanins in Begonia semperflorens under low-temperature and high-light conditions

| PRJNA421441 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data