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Venustaconcha ellipsiformis isolate:H3412

ABSTRACT: The draft genome of the freshwater mussel Venustaconcha ellipsiformis (Bivalvia: Unionida).

PROVIDER: PRJNA433387 | ENA |

REPOSITORIES: ENA

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			Action	DRS
		Other
	SRR6689530_1.fastq.gz	Fastqsanger.gz
	SRR6689530_2.fastq.gz	Fastqsanger.gz
	SRR6689531_subreads.fastq.gz	Fastqsanger.gz
	SRR6689532_1.fastq.gz	Fastqsanger.gz

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Hyriopsis cumingii

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Draft genome sequencing of Lactuca. sativa cv. Tizian

Project description:The draft genome of L. sativa (lettuce) cv. Tizian was sequenced in two Illumina sequencing runs, mate pair and shotgun. This entry contains the RAW sequencing data.

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Transcriptomic responses of the endangered freshwater mussel Margaritifera margaritifera to trace metal contamination in the Dronne River, France

Project description:The freshwater pearl mussel Margaritifera margaritifera is one of the most threatened freshwater bivalves worldwide. In this study, we aimed (i) to study the processes by which water quality might affect freshwater mussels in situ and (ii) to provide insights into the ecotoxicological significance of water pollution to natural populations in order to provide necessary information to enhance conservation strategies. M. margaritifera specimens were sampled in two close sites located upstream or downstream from an illegal dumping site. The renal transcriptome of these animals was assembled and gene transcription determined by RNA-seq. Correlations between transcription levels of each single transcript and the bioaccumulation of 9 trace metals, age (estimated by sclerochronology) and condition index were determined in order to identify genes likely to respond to a specific factor. Amongst the studied metals, Cr, Zn, Cd and Ni were the main factors correlated with transcription levels, with effects on translation, apoptosis, immune response, response to stimulus and transport pathways. However, the main factor explaining changes in gene transcription appeared to be the age of individuals with a negative correlation with the transcription of retrotransposons-related genes. To investigate this effect further, mussels were classified into 3 age classes. In young, middle-aged and old animals, transcription levels were mainly explained by Cu, Zn and age, respectively. This suggests differences in the molecular responses of this species to metals during its lifetime that must be better assessed in future ecotoxicology studies.

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