Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Human Oral Microbiome assessed by mouthwash samples from PLCO nested case-control study for head and neck and pancreatic cancer

PROVIDER: PRJNA434312 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6752090.fastq.gz	Fastqsanger.gz
	SRR6752100.fastq.gz	Fastqsanger.gz
	SRR6752110.fastq.gz	Fastqsanger.gz
	SRR6752120.fastq.gz	Fastqsanger.gz
	SRR6752130.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 661

Similar Datasets

Project description:Human Oral Microbiome assessed by mouthwash samples from ACS CPS II nested case-control study for head and neck and pancreatic cancer

| PRJNA434300 | ENA

Array comparative genomic hybridization in oral cavity (head and neck) squamous cell carcinoma

Project description:Genome wide high resolution assay of copy number in a series of frozen, microdissected head and neck cancers originating from the oral cavity. The objective was to characterize areas of amplification and deletion in head and neck cancers arising from the oral cavity subsite.

2012-04-01 | GSE33983 | GEO

A minimal DNA 5-methylcytosine signature of oral tongue squamous cell carcinoma [HumanHT-12 V4.0]

Project description:Oral tongue squamous cell carcinomas (OTSCC) are a homogenous group of aggressive tumors in the head and neck region, with a rising incidence among younger population. The role of altered DNA methylation in OTSCC and its link with clinical parameters has not been fully assessed yet. We performed genome-wide methylation analysis of oral tongue primary tumors (n = 52) using 485, 512 probes and correlated altered methylation with differences in gene expression. We used an ensemble machine-learning algorithm to identify differentially methylated probes and regions predictive of survival, risk habits, nodal status, tumor stage, and HPV infection followed by validation using data from the cancer genome atlas (TCGA) project on oral tongue (n = 24) and tumors from all subsites of head and neck region (n = 50).

2016-06-01 | GSE75539 | GEO

A minimal DNA 5-methylcytosine signature of oral tongue squamous cell carcinoma [HumanHT-12 WG-DASL V4.0]

2016-06-01 | GSE75538 | GEO

A minimal DNA 5-methylcytosine signature of oral tongue squamous cell carcinoma [methylation]

2016-06-01 | GSE75537 | GEO

A minimal DNA 5-methylcytosine signature of oral tongue squamous cell carcinoma [methylation]

2016-06-01 | E-GEOD-75537 | biostudies-arrayexpress

Gene expression analysis of head and neck squamous cell carcinoma cell lines and a control normal oral epithelial cell line

Project description:Microarrays were used to examine gene expression differences between human head and neck squamous cell carcinoma cell lines (FaDu, UTSCC8, UTSCC42a) grown in culture in comparison to a normal oral epithelial cell line. Gene expression data was integrated with global protein expression of head and neck squamous cell carcinoma cell lines and conditioned media to identify secreted protein markers up-regulated at the mRNA level in cancer cells versus the normal cell line. Total RNA obtained from head and neck squamous cell carcinoma cell lines and a normal oral epithelial cell line

2012-08-28 | E-GEOD-40185 | biostudies-arrayexpress

Array comparative genomic hybridization in oral cavity (head and neck) squamous cell carcinoma

2012-03-31 | E-GEOD-33983 | biostudies-arrayexpress

Project description:The oral microbiome and the risk of head and neck cancer: A nested case-control study in the NIH-AARP

| PRJNA846182 | ENA

Peripheral blood DNA methylation profiles are predictive of head and neck squamous cell carcinoma

Project description:Genome wide DNA methylation profiling and semi-supervised classification of blood samples from a case-control study of head and neck squamous cell carcinoma (HNSCC). The Illumina Infinium 27k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 27,000 CpGs in peripheral blood. Samples included peripheral blood samples from 92 incident cases of HNSCC and 92 control subjects.

2012-06-24 | GSE30229 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data