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Comparative transcriptome analyses of three medicinal Forsythia species and prediction of candidate genes involved in secondary metabolisms

ABSTRACT: Comparative transcriptome analyses of three medicinal Forsythia species and prediction of candidate genes involved in secondary metabolisms

PROVIDER: PRJNA436732 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR6799520_1.fastq.gz	Fastqsanger.gz
	SRR6799520_2.fastq.gz	Fastqsanger.gz
	SRR6799521_1.fastq.gz	Fastqsanger.gz
	SRR6799521_2.fastq.gz	Fastqsanger.gz
	SRR6799522_1.fastq.gz	Fastqsanger.gz

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Comparative transcriptome analyses of three medicinal Forsythia species and prediction of candidate genes involved in secondary metabolisms [Forsythia suspensa]

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Comparative transcriptome analyses of three medicinal Forsythia species and prediction of candidate genes involved in secondary metabolisms [Forsythia viridissima]

Project description:Here, de novo transcriptome assemblies for leaf and flower tissues of Forsythias were performed, resulting in 81913 unigenes of F. suspensa, 88491 unigenes of F. viridissima and 69458 unigenes of F. koreana (F. viridissima var. koreana). Classification of the annotated unigenes by gene ontology terms and KEGG pathways was used to explore transcriptomic differences among the Forsythias. Orthogroup was introduced to compare expression levels of unigenes in tissues from different species, which unveiled that three leaf tissues of Fosythias were closely correlated based on expression values of orthologous unigenes. Showing high expression mainly in leaves of F. viridissima and F. koreana, candidate homologs for genes involved in the biosynthetic pathway of lignans and phenylethanoid glycosides were determined in these transcriptome assemblies.

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Project description:This SuperSeries is composed of the SubSeries listed below.

2018-06-01 | GSE111376 | GEO

Comparative transcriptome analyses of three medicinal Forsythia species and prediction of candidate genes involved in secondary metabolisms [Forsythia viridissima var. koreana]

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