Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Shotgun sequencing of museum specimens (Tenebrionidae: Pedinini)

PROVIDER: PRJNA443422 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6898366_1.fastq.gz	Fastqsanger.gz
	SRR6898366_2.fastq.gz	Fastqsanger.gz
	SRR6898367_1.fastq.gz	Fastqsanger.gz
	SRR6898367_2.fastq.gz	Fastqsanger.gz
	SRR6898368_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Project description:Shotgun sequences of museum specimens of Diademed Sifakas

| PRJNA1035496 | ENA

Archival chromatin sequencing in eastern water dragon museum specimens

Project description:Formalin induces inter- and intra-molecular crosslinks within exposed cells. This cross-linking can be exploited to characterise chromatin state as in the MNase (micrococcal nuclease) assays. Our team aims to optimise these assays for application in museum preserved formalin-exposed specimens. To do so, we applied an optimised MNase assay to fresh-frozen and archival eastern water dragon specimens, as old as 1905. We found that heavy formalin fixation modulates rather than eliminates signatures of differential chromatin accessibility and that these chromatin profiles are sex-specific and environmental condition dependent.

2024-03-01 | GSE256157 | GEO

Archival chromatin sequencing in formalin-fixed mouse specimens [FAIRE and Mnase]

Project description:Formalin induces inter- and intra-molecular crosslinks within exposed cells. This cross-linking can be exploited to characterise chromatin state as in the FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) and MNase (micrococcal nuclease) assays. Here, we optimised the FAIRE and MNase assays for application upon heavily-fixed tissues as is typically found in historical formalin-preserved museum specimens. We demonstrate these assays in formalin-fixed mouse specimens and compare the chromatin signatures to specimen-matched fresh tissues. We found that heavy formalin fixation modulates rather than eliminates signatures of differential chromatin accessibility and that these chromatin profiles are reproducible, tissue-specific and sex-specific in vertebrate specimens.

2024-03-15 | GSE261169 | GEO

Project description:Drosophila melanogaster genomes from museum specimens

| PRJNA945389 | ENA

Project description:Gut Microbiota of Amphibian Museum Specimens

| PRJNA836960 | ENA

Project description:Bisulfite ddRAD sequencing of historic Peromyscus museum specimens

| PRJNA578759 | ENA

Project description:Long-tailed macaque museum specimen shotgun sequencing

| PRJNA634778 | ENA

Metagenomic sequencing of gorilla dental calculus

Project description:Shotgun sequencing of samples of dental calculus taken from museum specimens of Mountain, lowland, and Grauer's gorillas.

| PRJEB49638 | ENA

Archival chromatin sequencing in formalin-fixed mouse specimens

Project description:Formalin induces inter- and intra-molecular crosslinks within exposed cells. This cross-linking can be exploited to characterise chromatin state as in the FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) and MNase (micrococcal nuclease) assays. Here, we optimised the FAIRE and MNase assays for application upon heavily-fixed tissues as is typically found in historical formalin-preserved museum specimens. We demonstrate these assays in formalin-fixed mouse specimens and compare the chromatin signatures to specimen-matched fresh tissues. We found that heavy formalin fixation modulates rather than eliminates signatures of differential chromatin accessibility and that these chromatin profiles are reproducible, tissue-specific and sex-specific in vertebrate specimens.

2024-03-01 | GSE256158 | GEO

Archival chromatin sequencing in eastern water dragon museum specimens

Project description:Archival chromatin sequencing in eastern water dragon museum specimens

| PRJNA1078353 | ENA