Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Asian water dragon parthenogenesis

PROVIDER: PRJNA445457 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6889000_1.fastq.gz	Fastqsanger.gz
	SRR6889000_2.fastq.gz	Fastqsanger.gz
	SRR6889001_1.fastq.gz	Fastqsanger.gz
	SRR6889001_2.fastq.gz	Fastqsanger.gz
	SRR6888999_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Archival chromatin sequencing in eastern water dragon museum specimens

Project description:Formalin induces inter- and intra-molecular crosslinks within exposed cells. This cross-linking can be exploited to characterise chromatin state as in the MNase (micrococcal nuclease) assays. Our team aims to optimise these assays for application in museum preserved formalin-exposed specimens. To do so, we applied an optimised MNase assay to fresh-frozen and archival eastern water dragon specimens, as old as 1905. We found that heavy formalin fixation modulates rather than eliminates signatures of differential chromatin accessibility and that these chromatin profiles are sex-specific and environmental condition dependent.

2024-03-01 | GSE256157 | GEO

Gene expression in the tail tissue of tadpoles [Rana pirica] by larvae salamander or dragon fly

Project description:Tadpoles of the anuran species Rana pirica can undergo predator-specific morphological responses. Exposure to a predation threat by larvae of the salamander Hynobius retardatus results in formation of a bulgy body (bulgy morph) with a higher tail. Whereas, dragon fly also induced higher tail tadpole. The tadpoles revert to a normal phenotype upon removal of the larval salamander or dragon fly threat. The objective of the present study was to use Affymetrix Xenopus Genechip to profile gene expression in the tail tissue by different predation threat. Tadpoles of Rana pirica treated with larvae salamander for 8days (S1, S2, S3) or dragon fly for 8days (Y1,Y2, Y3) were analyzed with triplicate. Removal experiments were also treated with predators for 4days and then removed predators from tadpoles (-S1,-S2, -S3) or (-Y1,-Y2,-Y3). Controls were cultured for 8days without predators (C2, C3). Tails from tadpoles after 8days of each treatment were dissected for RNA extraction and gene expression analysis using Affymetrix Xenopus Genechip arrays.

2016-10-24 | E-GEOD-33250 | biostudies-arrayexpress

Project description:Asian water Buffalo sequence

| PRJNA946363 | ENA

Gene expression in the tail tissue of tadpoles [Rana pirica] by larvae salamander or dragon fly

2016-10-24 | GSE33250 | GEO

Project description:metagenome of samples from the Dragon Shaped Water System

| PRJNA725617 | ENA

Archival chromatin sequencing in eastern water dragon museum specimens

Project description:Archival chromatin sequencing in eastern water dragon museum specimens

| PRJNA1078353 | ENA

Project description:Asian Haizi water Buffalo sequence

| PRJNA950349 | ENA

The developmental origins of heterodonty and acrodonty as revealed by reptile dentitions

Project description:Owing to their exceptional diversity and central role in vertebrate evolution, teeth are key biological systems. We exploited the diversity of bearded dragon dentitions to unreveal new aspects of major dental characters only represented in non-mammalian lineages.

2021-11-01 | GSE173967 | GEO

Project description:Whole genome sequencing of Asian water buffalo

| PRJNA1057008 | ENA

Gene expression profiles of subjects exposed to Arsenic through drinking water in Pakistan

Project description:Ground water Arsenic toxicity is the global problem and millions of people are exposed to elevated levels through drinking water than WHO permiscible limit of 10µg/L. The exposure is associated with various cancerous and non-cancerous diseases. It may alter the gene expression profile of invidual and suppress the activity of various genes giving rise to different diseases. Pakistan, a developing country in South Asian region, also have different areas reported to have elevated Ground water As. levels since 2005. The Present Study aimed to investigate Transcriptome profile of the exposed subjects in two districts of Punjab Province Pakistan. i.e Lahore and Kasur. The population was stratified into three exposure groups comprising Low, Medium and High exposure based on their urinary arsenic levels. We used Agilent Microarrays platform for Transcriptomics analysis and Linear mixed model was used to find differential gene expression associated with Arsenic exposure

2019-12-26 | GSE110852 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data