Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Genome-wide maps of DNA Polymerase pausing in asynchronously growing yeast cells

ABSTRACT: Genome-wide maps of DNA Polymerase pausing in asynchronously growing yeast cells

PROVIDER: PRJNA445974 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6908190.fastq.gz	Fastqsanger.gz
	SRR6908200.fastq.gz	Fastqsanger.gz
	SRR6908191.fastq.gz	Fastqsanger.gz
	SRR6908201.fastq.gz	Fastqsanger.gz
	SRR6908192.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Genome-wide maps of histone H3 in asynchronously growing yeast cells

Project description:Genome-wide maps of histone H3 in asynchronously growing yeast cells

| PRJNA445976 | ENA

Genome-wide maps of nucleosome positioning in asynchronously growing yeast cells

Project description:Genome-wide maps of nucleosome positioning in asynchronously growing yeast cells

| PRJNA445977 | ENA

Genome-wide maps of RNA Polymerase I and III in asynchronously growing yeast cells

Project description:Genome-wide maps of RNA Polymerase I and III in asynchronously growing yeast cells

| PRJNA445975 | ENA

Genome-wide maps of DNA Polymerase pausing in asynchronously growing yeast cells

Project description:ChIP-seq of FLAG-tagged Pol2 (subunit of DNA Polymerase epsilon) was performed on two independent isolates of each of WT, isw2∆, nhp10∆, and isw2∆ nhp10∆ cells. Sample naming convention: <ChIP target>_<growth condition>_<genotype-replicate>_<strain name>

2018-10-30 | GSE112426 | GEO

Genome-wide maps of chromatin remodeling factors Isw2 and Ino80 in asynchronously growing yeast cells

Project description:Genome-wide maps of chromatin remodeling factors Isw2 and Ino80 in asynchronously growing yeast cells

| PRJNA445972 | ENA

Genome-wide maps of RNA Polymerase I and III in asynchronously growing yeast cells

Project description:ChIP-seq of FLAG-tagged RPA190 (subunit of RNA Polymerase I) or FLAG-tagged RPO31 (subunit of RNA Polymerase III) was performed on WT and isw2∆ nhp10∆ cells. Sample naming convention: <ChIP target>_<growth condition>_<genotype>_<strain name>

2018-10-30 | GSE112425 | GEO

Genome-wide maps of nucleosome positioning in asynchronously growing yeast cells

Project description:MNase-seq was performed in WT, isw2∆, nhp10∆, and isw2∆ nhp10∆ cells. Sample naming convention: MNase_<growth condition>_<genotype-replicate>_<strain name>_<units MNase>

2018-10-30 | GSE112427 | GEO

Genome-wide maps of histone H3 in asynchronously growing yeast cells

Project description:ChIP-seq of histone H3 was performed on two biological replicates of the same W303 strain of wild-type cells and two independent isolates of each of isw2∆, nhp10∆, and isw2∆ nhp10∆ cells. Sample naming convention: <ChIP target>_<growth condition>_<genotype-replicate>_<strain name>

2018-10-30 | GSE112424 | GEO

Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing

Project description:Transcription regulation occurs frequently through promoter-associated pausing of RNA polymerase II (Pol II). We developed a Precision nuclear Run-On and sequencing assay (PRO-seq) to map the genome-wide distribution of transcriptionally-engaged Pol II at base-pair resolution. Pol II accumulates immediately downstream of promoters, at intron-exon junctions that are efficiently used for splicing, and over 3' poly-adenylation sites. Focused analyses of promoters reveal that pausing is not fixed relative to initiation sites nor is it specified directly by the position of a particular core promoter element or the first nucleosome. Core promoter elements function beyond initiation, and when optimally positioned they act collectively to dictate the position and strength of pausing . We test this ‘Complex Interaction’ model with insertional mutagenesis of the Drosophila Hsp70 core promoter. Identification of RNA polymerase active sites in Drosophila S2 cell line using PRO-seq method. Identification of transcription initiation sites in Drosophila S2 cell line using PRO-cap method. Identification of changes in RNA polymerase active sites on transgenic Hsp70 promoters upon disruption of DNA sequence elements in 3 transgenic fly lines using PRO-seq method.

2013-02-01 | E-GEOD-42117 | biostudies-arrayexpress