Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Plasmodium falciparum

ABSTRACT: De Novo Mutation Discovery in Plasmodium falciparum

PROVIDER: PRJNA448783 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR6941990_1.fastq.gz	Fastqsanger.gz
	SRR6941990_2.fastq.gz	Fastqsanger.gz
	SRR6942000_1.fastq.gz	Fastqsanger.gz
	SRR6942000_2.fastq.gz	Fastqsanger.gz
	SRR6942010_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 100

Similar Datasets

Plasmodium falciparum

Project description:Plasmodium falciparum mutation accumulation Raw sequence reads

| PRJNA521718 | ENA

Expression analysis of Plasmodium falciparum 3D7 delta-PfPuf2 mutant

Project description:Investigation of whole genome gene expression level changes in Plasmodium falciparum 3D7 delta-PfPuf2 mutant, compared to the wild-type strain 3D7. The mutation engineered into this strain render tanslational control. The mutants analyzed in this study are further described in Miao J, Li J, Fan Q, Li X, Li X, Cui L.2010. The Puf-family RNA-binding protein PfPuf2 regulates sexual development and sex differentiation in the malaria parasite Plasmodium falciparum. J Cell Sci. 123(7):1039-49 (PMID 20197405). A 12 chip study using total RNA recovered from six separate wild-type cultures of Plasmodium falciparum 3D7 at gametocyte stage III (three cultures) and stage V (three cultures) and six separate cultures of dalta PfPuf2 mutant at gametocyte stage III (three cultures) and stage V (three cultures). Each chip measures the expression level of 5,367 genes from Plasmodium falciparum 3D7 with 45-60 mer probes with two replicates on final array of 71618 probes.

2012-07-05 | E-GEOD-39124 | biostudies-arrayexpress

Expression analysis of Plasmodium falciparum 3D7 delta-PfPuf2 mutant

2012-07-06 | GSE39124 | GEO

Plasmodium falciparum NF54 Transcriptome

Project description:Transcriptomic Analysis of Cultured Sporozoites of P. falciparum RNA-seq reads from each of three developmental stages (2 replicates per sample) were mapped to the reference Plasmodium falciparum genome, and gene expression levels were calculated for each sample.

2013-12-03 | E-GEOD-52867 | biostudies-arrayexpress

Plasmodium falciparum Dd2

Project description:Early Genomic Amplifications in Blood-Stages of ARMD Plasmodium falciparum Acquiring De Novo Drug Resistance [Expression]

| PRJNA155675 | ENA

Plasmodium falciparum strain:multiple

Project description:Plasmodium falciparum Multi-isolate project for SNP discovery

| PRJNA51255 | ENA

Plasmodium falciparum

Project description:Plasmodium falciparum Epigenomics

| PRJNA349753 | ENA

Plasmodium falciparum Dd2

Project description:Early Genomic Amplifications in Blood-Stages of ARMD Plasmodium falciparum Acquiring De Novo Drug Resistance [Genome variation]

| PRJNA155661 | ENA

A comprehensive epigenome map of Plasmodium falciparum reveals unique mechanisms of transcriptional regulation

Project description:Epigenetic mechanisms have been poorly understood in Plasmodium falciparum, the causative agent of malaria. To elucidate stage specific epigenetic regulations in P. falciparum, we performed genome-wide mapping of various histone modifications, nucleosomes and RNA Polymerase II. Our comprehensive analysis suggest that transcription initiation and elongation are distinct in Plasmodium. In this study, by analyzing histone modifications, nucleosome occupancy and RNA Polymerase II (Pol II) at three different IEC developmental stages of Plasmodium; ring, trophozoite and schizont, we tried to unravel the epigenetic mechanism associated with gene regulation. Examination of H3K27me3, H3K4me3, H3K9me3, H3K14ac, H3K4me1, H3K79me3, H3K27ac, H3K4me2, H3K9ac, H4ac, RNA Pol II and Histone H3 at three different stages of Plasmodium falciparum

2015-09-23 | E-GEOD-63369 | biostudies-arrayexpress

Plasmodium falciparum

Project description:Plasmodium falciparum Genome sequencing

| PRJNA264751 | ENA