Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA_Seq-based global transcriptome analysis of S. pneumoniae mutants lacking PhpP and StkP

ABSTRACT: RNA_Seq-based global transcriptome analysis of S. pneumoniae mutants lacking PhpP and StkP

PROVIDER: PRJNA450842 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7030471_1.fastq.gz	Fastqsanger.gz
	SRR7030471_2.fastq.gz	Fastqsanger.gz
	SRR7030472_1.fastq.gz	Fastqsanger.gz
	SRR7030472_2.fastq.gz	Fastqsanger.gz
	SRR7030473_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

RNA_Seq-based global transcriptome analysis of S. pneumoniae mutants lacking PhpP and StkP

Project description:We report the mRNA expression profile of Streptococcus pneumoniae Type 2 D39 strain-derived mutant lacking the phpP gene encoding eukaryote-type ser/thr phosphatase and the stkP gene encoding Ser/Thr protein kinase.

2019-04-13 | GSE113337 | GEO

RNA_Seq-based global transcriptome analysis of Streptococcus pyogenes M1T15448 lacking Spy_1476/SP-TyK

Project description:RNA_Seq-based global transcriptome analysis of Streptococcus pyogenes M1T15448 lacking Spy_1476/SP-TyK

| PRJNA451018 | ENA

RNA_Seq-based global transcriptome analysis of Streptococcus pyogenes M1T15448 lacking Spy_1476/SP-TyK

Project description:We report the mRNA expression profile of Streptococcus pyogenes M1T15448 strain-derived mutant lacking the spy_1476/sp-tyk gene encoding tyrosine kinase/GTP-ATP hydrolase

2019-04-13 | GSE113381 | GEO

Transcriptome data from tomato parthenocarpic mutants lacking SlDELLA

Project description:Transcriptome data from tomato parthenocarpic mutants lacking SlDELLA

| PRJNA741940 | ENA

Global proteomics proteasome mutants

Project description:Temperature sensitive(TS)missense mutants have been foundational in the characterization of the function of essential genes due to their pronounced cellular phenotypes that are likely associated with protein functional disruption. However, an unbiased approach for the analysis of the biochemical and biophysical changes in missense mutants within the context of their functional proteomes is lacking. We applied mass spectrometry (MS) based thermal proteome profiling (TPP)to investigate the proteome-wide effects of missense mutations in a specific application of TPP that we refer to as mutant Thermal Proteome Profiling (mTPP). This study characterized the global changes in mRNA abundance, protein abundance, and protein thermal stability as a result of missense mutants within two subunits of the yeast ubiquitin-proteasome system. Global protein abundance measurements and RNA sequencing data resulted in a large number of possible candidates that could be causing the phenotypic changes observed in the mutant strains. The additional information gained from mTPP along with complementary proteomic and transcriptomic experiments allows for multiomic intersection analysis that may reveal interesting regulatory categories to pursue in follow-up mechanistic experiments.

2020-11-03 | PXD017223 | Pride

Transcriptome data from tomato parthenocarpic mutants lacking Tomato APETALA3 (TAP3)

Project description:Transcriptome data from tomato parthenocarpic mutants lacking Tomato APETALA3 (TAP3)

| PRJNA741939 | ENA

Transcriptome data from tomato parthenocarpic mutants lacking SlDELLA

Project description:We investigated the behavior of tomato mutants lacking SlDELLA, a negative regulator of gibberellin (GA) signaling pathway. To focus on the early stages of anthesis, ovary samples of MicroTom-B (MT-B) and the mutant at the three stages (bud, flowering, and after flowering) were collected.

2022-05-18 | GSE179025 | GEO

Transcriptome data from tomato parthenocarpic mutants lacking Tomato APETALA3 (TAP3)

Project description:We investigated the behavior of tomato mutants lacking transcription factors of TAP3, a class B MADS-box gene controlling parthenocarpy. To focus on the early stages of anthesis, ovary samples of MicroTom-J (MT-J) and the mutant at the different stages (e.g., bud, flowering, and after flowering) were collected.

2022-05-18 | GSE179026 | GEO

RNA-seq analysis of S. pneumoniae Pn-STP (PhpP) mutants

2016-10-27 | E-GEOD-74421 | biostudies-arrayexpress

RNA_Seq of AGOI_IP long (16:8), short (8:16) day heads

Project description:Input and IP (AGO1_ab) RNA_seq libraries were prepared from long (2 libraries) and short (1 library) day heads

2021-12-04 | GSE189992 | GEO