Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Dynamics of copy number variation in evolving populations

PROVIDER: PRJNA451489 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7057740_1.fastq.gz	Fastqsanger.gz
	SRR7057740_2.fastq.gz	Fastqsanger.gz
	SRR7057750_1.fastq.gz	Fastqsanger.gz
	SRR7057750_2.fastq.gz	Fastqsanger.gz
	SRR7057760_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 259

Similar Datasets

Global variation of copy number in the human genome_COMM

Project description:Identify and categorize copy number variation in normal populations Keywords: Copy number variation detection

2006-09-30 | GSE5173 | GEO

Global variation of copy number in the human genome_EA

Project description:Identify and categorize copy number variation in normal populations Keywords: Copy number variation detection

2006-09-30 | GSE5013 | GEO

Polyploidy can drive rapid adaptation in yeast

Project description:Analysis of copy number variation in evolved haploid, diploid, tetraploid strains. All experimental samples were compared to the same reference strain S288C. The samples include the progenitor strains for the haploid, diploid, and tetraploid evolution experiments, and single colony isolates (clones) from the evolving populations at given time points. Evolved clones were analyzed at generation 250 unless the name is followed by gen35, gen55 or gen500, in which case those generations were analyzed.

2015-02-28 | E-GEOD-51017 | biostudies-arrayexpress

Homo sapiens

Project description:Genotype, haplotype and copy number variation in worldwide human populations.

| PRJNA108575 | ENA

Extensive Copy-Number Variation of Young Genes across Stickleback Populations

Project description:Extensive Copy-Number Variation of Young Genes across Stickleback Populations

| PRJEB5198 | ENA

Homo sapiens

Project description:Copy Number Variation in Neuroblastoma

| PRJNA186673 | ENA

Great Ape Copy Number Variation

Project description:Great Ape Copy Number Variation

| PRJNA144461 | ENA

Project description:copy number variation among silkworm

| PRJEB5458 | ENA

Global variation of copy number in the MCF7 genome

Project description:Identify copy number variation in the MCF7 genome Keywords: Copy number variation detection

2008-02-08 | GSE8508 | GEO

Genotype, haplotype and copy number variation in worldwide human populations.

Project description:Genome-wide patterns of variation across individuals provide a powerful source of data for uncovering the history of migration, range expansion, and adaptation of the human species. However, high-resolution surveys of variation in genotype, haplotype and copy number have generally focused on a small number of population groups. Here we report the analysis and public release of high-quality genotypes at 525,910 single-nucleotide polymorphisms (SNPs) and 396 copy-number-variable loci in a worldwide sample of 29 populations. Analysis of SNP genotypes yields strongly supported fine-scale inferences about population structure. Increasing linkage disequilibrium is observed with geographic distance from Africa, as expected under a serial founder effect for an out-of-Africa spread of human populations. New approaches for haplotype analysis produce inferences about population structure that complement results based on unphased SNPs. Despite a difference from SNPs in the frequency spectrum of the copy-number variants (CNVs) detected—including a comparatively large number of CNVs in previously unexamined populations from Oceania and the Americas—the global distribution of CNVs largely accords with population structure analyses for SNP data sets of similar size. Our results produce new inferences about inter-population variation, support the utility of CNVs in human population-genetic research, and serve as a genomic resource for human-genetic studies in diverse worldwide populations. Keywords: High Density SNP array

2008-02-05 | GSE10331 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data