Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bisulfite sequencing of Sordaria macrospora wild type and asf1 mutant

ABSTRACT: Bisulfite sequencing of Sordaria macrospora wild type and asf1 mutant

PROVIDER: PRJNA454909 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7109586_1.fastq.gz	Fastqsanger.gz
	SRR7109586_2.fastq.gz	Fastqsanger.gz
	SRR7109587_1.fastq.gz	Fastqsanger.gz
	SRR7109587_2.fastq.gz	Fastqsanger.gz
	SRR7109588_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Bisulfite sequencing of Sordaria macrospora wild type and asf1 mutant

Project description:The aim of this analysis was to analyze DNA methylation in the wild type and the histone chaperone mutant asf1 of the filamentous fungus Sordaria macrospora.

2018-11-26 | GSE114029 | GEO

Hi-C analysis of the Sordaria macrospora wild type and developmental mutant delta-asf1 [HiC]

Project description:Chromatin organization of the wild type and delta-asf1 mutant of the filamentous ascomycete Sordaria macrospora was analyzed by Hi-C. The delta-asf1 mutant lacks the conserved histone chaperone ASF1 and is unable to produce sexual fruiting bodies. It was hypothesized that the lack of the histone chaperone ASF1 in the mutant might lead to differences in short- or long-distance interactions of chromatin. Furthermore, it was hypothesized that chromatin organization might change during sexual development in the wild type as a prerequisite for the drastic transcriptome changes during development that were observed in earlier studies.

2023-11-20 | GSE216632 | GEO

MNase-seq analysis of wild type and asf1 mutant of Sordaria macrospora

Project description:The aim of this analysis was to analyze nucleosome distribution in the filamentous ascomycete Sordaria macrospora by micrococcal nuclease digestion and sequencing.

2018-11-26 | GSE92461 | GEO

Sordaria macrospora

Project description:MNase-seq analysis of wild type and asf1 mutant of Sordaria macrospora

| PRJNA357608 | ENA

Sordaria macrospora pro32

Project description:Sordaria macrospora pro32 genome sequencing

| PRJNA230545 | ENA

Transcriptome analysis of a Sordaria macrospora nox1 mutant

Project description:The Sordaria macrospora nox1 mutant has a block in sexual development at the stage of protoperithecia formation, and therefore is sterile. The aim of this study was to determine the transcriptome of microdissected protoperithecia from the mutant, as well as the transcriptomes of total RNA from the mutant and the wild type for comparison. The data were then compared with transcriptome data from protoperithecia of the wild type and the developemental mutant pro1; the corresponding data were generated in a previous study (Teichert et al. 2012, BMC Genomics 13: 511, GEO accession GSE33668).

2014-03-10 | GSE49363 | GEO

Gene expression in developmental mutants of Sordaria macrospora

Project description:The aim of this analysis was to analyze gene expression in developmental mutants of the filamentous ascomycete Sordaria macrospora. RNA was isolated from total mycelia, or young fruiting bodies (protoperithecia) were isolated by laser microdissection and RNA was extracted, amplified and used for RNA-sequencing.

2018-11-26 | GSE92337 | GEO

Sordaria macrospora strain:wild type SN1693

Project description:Sordaria macrospora strain:wild type SN1693 Genome sequencing and assembly

| PRJNA744349 | ENA

Sordaria macrospora

Project description:Transcriptome analysis of a Sordaria macrospora nox1 mutant

| PRJNA213728 | ENA

Sordaria macrospora

Project description:Gene expression in developmental mutants of Sordaria macrospora

| PRJNA357259 | ENA