Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

The diversity of soil actinobacterial community in the Heihe river basin, China

ABSTRACT: The diversity of soil actinobacterial community in the Heihe river basin, China Targeted loci environmental

PROVIDER: PRJNA464179 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Koshi River Basin raw sequences

Project description:Koshi River Basin raw sequences Metagenome

| PRJNA515965 | ENA

Heihe River Basin soil bacteria

Project description:Heihe River Basin soil bacteria Metagenome

| PRJNA801892 | ENA

Gene Expression in Prokaryotic Microbial Assemblages Across Salinity Gradients in the Columbia River Coastal Margin

Project description:Analysis of microbial gene expression in response to physical and chemical gradients forming in the Columbia River, estuary, plume and coastal ocean was done in the context of the environmental data base. Gene expression was analyzed for 2,234 individual genes that were selected from fully sequenced genomes of 246 prokaryotic species (bacteria and archaea) as related to the nitrogen metabolism and carbon fixation. Seasonal molecular portraits of differential gene expression in prokaryotic communities during river-to-ocean transition were created using freshwater baseline samples (268, 270, 347, 002, 006, 207, 212). Total RNA was isolated from 64 filtered environmental water samples collected in the Columbia River coastal margin during 4 research cruises (14 from August, 2007; 17 from November, 2007; 18 from April, 2008; and 16 from June, 2008), and analyzed using microarray hybridization with the CombiMatrix 4X2K format. Microarray targets were prepared by reverse transcription of total RNA into fluorescently labeled cDNA. All samples were hybridized in duplicate, except samples 212 and 310 (hybridized in triplicate) and samples 336, 339, 50, 152, 157, and 199 (hybridized once). Sample location codes: number shows distance from the coast in km; CR, Columbia River transect in the plume and coastal ocean; NH, Newport Hydroline transect in the coastal ocean at Newport, Oregon; AST and HAM, Columbia River estuary locations near Astoria (river mile 7-9) and Hammond (river mile 5), respectively; TID, Columbia River estuary locations in the tidal basin (river mile 22-23); BA, river location at Beaver Army Dock (river mile 53) near Quincy, Oregon; UP, river location at mile 74.

2010-09-10 | E-GEOD-18303 | biostudies-arrayexpress

Lhasa River, Tibet, China

Project description:Lhasa River, Tibet, China Raw sequence reads

| PRJNA680676 | ENA

Soil bacterial community in Yellow River Delta of Shandong Province, China

Project description:Soil bacterial community in Yellow River Delta of Shandong Province, China Targeted loci environmental

| PRJNA483529 | ENA

Prior Knowledge-based Approach for Associating Emerging Contaminants with Effects in Fish Exposed In Situ: A Case Study in the St. Croix River Basin, MN, WI, USA.

Project description:Evaluating the potential human health and ecological risks associated with exposures to complex chemical mixtures in the environment is one of the main challenges of chemical safety assessment and environmental protection. There is a need for approaches that can help to integrate chemical monitoring and biological effects data to evaluate risks associated with specific chemicals present in the environment. In the present study water samples from five locations near two wastewater treatment plants in the St. Croix River basin on the border of MN and WI, USA were analyzed for 127 contaminants including wastewater indicators, pharmaceuticals, and a number of natural and synthetic steroids. Prior knowledge about chemical-gene interactions was used to develop site-specific knowledge assembly models (KAMs) that were used to formulate hypothesis concerning possible biological effects of exposure to the chemicals detected at each location and suggest assays and endpoints for follow-up investigation. Additionally empirical hepatic gene expression data were collected for fathead minnows (Pimephales promelas) exposed in situ, for 12 d, at each location using a high density oligonucleotide microarray. Empirical gene expression data were analyzed to identify functional annotation terms enriched among the lists of differentially-expressed probes. However, the general nature of many of the terms made hypothesis formulation on the basis of the transcriptome-level response alone difficult. However, integrated analysis of the transcriptome data in the context of the site-specific KAMs allowed for evaluation of the likelihood of specific chemicals contributing to observed biological responses, based on prior knowledge.

2016-05-11 | GSE81263 | GEO

Cobitis avicennae isolate:Karkheh River basin

Project description:Cobitis avicennae isolate:Karkheh River basin Genome sequencing and assembly

| PRJNA1102535 | ENA

Study of microbial functional structure in Xiangjiang River sediment

Project description:Xiangjiang River (Hunan, China) has been contaminated with heavy metal for several decades by surrounding factories. However, little is known about the influence of a gradient of heavy metal contamination on the diversity, structure of microbial functional gene in sediment. To deeply understand the impact of heavy metal contamination on microbial community, a comprehensive functional gene array (GeoChip 5.0) has been used to study the functional genes structure, composition, diversity and metabolic potential of microbial community from three heavy metal polluted sites of Xiangjiang River.

2016-08-02 | GSE85064 | GEO

Archaeal amoA community in Pearl River estuary, China

Project description:Archaeal amoA community retrieved from DNA and RNA in Pearl River estuary, China Raw sequence reads

| PRJNA610708 | ENA

bacteria from Ganjiang river in China

Project description:bacteria from Ganjiang river in China Raw sequence reads

| PRJNA645804 | ENA