Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Piciformes transposable elements

PROVIDER: PRJNA464344 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7126550_1.fastq.gz	Fastqsanger.gz
	SRR7126550_2.fastq.gz	Fastqsanger.gz
	SRR7126541_1.fastq.gz	Fastqsanger.gz
	SRR7126541_2.fastq.gz	Fastqsanger.gz
	SRR7126551_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 38

Similar Datasets

Project description:Regulation of transposable elements

| PRJNA395146 | ENA

The histone demethylase dLSD1 is required to achieve normal wing size and to silence Transposable Elements in epithelial cells

Project description:LSD1 regulates transposable elements

| PRJEB67336 | ENA

Homo sapiens strain:RD

Project description:DUX4-induced transposable elements

| PRJDB8318 | ENA

Project description:Transposable Elements and viral immunity

| PRJNA540249 | ENA

The Arabidopsis thaliana mobilome

Project description:Transposable elements (TEs) sequence capture

| PRJEB11704 | ENA

Gene expression in Arabidopsis ddm1 mutants with high levels of Transposable Element activity

Project description:Background: Transposable elements are known to influence the regulation of some genes. We aimed to determine which genes show altered gene expression when transposable elements are epigenetically activated. Results: We find over 2000 genes with altered steady-state expression levels in ddm1 mutants. Some of these genes are influenced by neighboring transposable element fragments, while other genes are targeted by transposable element derived 21 nucleotide siRNAs. Conclusion: The regulation of the genic portion of the Arabidopsis genome is heavily influenced by the epigenetic regulation of transposable elements. The regulation of genes by transposable elements can occur through multiple mechanisms. Three biological replicates for two genotypes

2014-04-07 | E-GEOD-46050 | biostudies-arrayexpress

Transposable elements are co-opted as oncogenic regulatory elements by lineage-specific transcription factors in prostate cancer

Project description:Transposable elements hold regulatory functions to impact cell fate determination by controlling gene expression, which when altered can promote oncogenesis. Despite accounting for half of the human genome, little is known about the transcriptional mechanisms that confer regulatory properties to transposable elements in pluripotent, mature versus oncogenic cell states. Through positional analysis over repetitive DNA sequence of H3K27ac ChIP-seq from 32 different normal cell and tissue states, we report pluripotent stem and mature cell states-specific “regulatory transposable elements”. Those specific to pluripotent stem cells are binding sites for the pluripotency factors NANOG, SOX2 and OCT4. In mature cell and tissue states, regulatory transposable elements are docking sites for lineage-specific transcription factors, such as AR and FOXA1 in benign prostate epithelium. Expanding the positional analysis to localized prostate tumors, we show how cancer cell states remaining dependent on AR share regulatory transposable elements with pluripotent stem cells. These include regulatory transposable elements, such as Tigger3a, that serve as binding sites for AR and whose regulatory functions are required for prostate cancer cell growth. Together, our results suggest that oncogenesis differs from normal cell fate determination by hijacking pluripotent stem cells regulatory transposable elements that serve as docking sites for lineage-specific transcription factors.

2023-09-08 | GSE224687 | GEO

Histone H3K9me3 ChIP-seq of young adult C. elegans wildtype, and mutants emb-4 (qm31) and hrde-1 (tm1200)

Project description:This data set was generated to study the silencing of transposable elements by the histone H3K9me3 mark and its relevance for the nuclear RNAi pathway.

2017-06-29 | E-MTAB-5662 | biostudies-arrayexpress

Project description:Transposable elements and DMelSV viral infection

| PRJNA643792 | ENA

Transposable Elements in Frontotemporal Lobar Degeneration

Project description:Transposable Elements in Frontotemporal Lobar Degeneration

| PRJNA561866 | ENA