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Sediment metagenome

ABSTRACT: Sorted cell/s from iron-sulfur acid spring sediment in Paint Pots, Banff, British Columbia, Canada - GAL15 bacterium JGI MDM2 PDUP-3-K19 metagenome

PROVIDER: PRJNA467009 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR10490635_1.fastq.gz	Fastqsanger.gz
	SRR10490635_2.fastq.gz	Fastqsanger.gz

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hot springs metagenome

Project description:Enriched cells from Paint Pots Mound iron-sulfur acid spring, British Columbia, Canada - PDU P1.3.2014 1203 MDM2 PDU P1 p3 16S.N18.double-seq metagenome

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hot springs metagenome

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M. sedula transcriptional response to ferrous iron and RISC supplements

Project description:Abstract: The crenarchaeal order Sulfolobales collectively contains at least five major terminal oxidase complexes. Based on genome sequence information, all five complexes are found only in Metallosphaera sedula and Sulfolobus tokodaii, the two sequenced Sulfolobales capable of iron oxidization. While specific respiratory complexes in certain Sulfolobales have been characterized previously as proton pumps for maintaining intracellular pH and generating proton motive force (pmf), their contribution to sulfur and iron biooxidation has not been considered. For M. sedula growing in the presence of ferrous iron and reduced inorganic sulfur compounds (RISCs), global transcriptional analysis was used to track the response of specific genes associated with these complexes, as well as other known and putative respiratory electron transport chain elements. ORFs from all five terminal oxidase or bc1-like complexes were stimulated on one or more conditions tested. Components of the fox (Msed0467-0489) and soxNL-cbsABA (Msed0500-0505) terminal/quinol oxidase clusters were triggered by ferrous iron, while the soxABCDD' terminal oxidase cluster (Msed0285-0291) were induced by tetrathionate and S°. Chemolithotrophic electron transport elements, including a putative tetrathionate hydrolase (Msed0804), a novel polysulfide/sulfur/DMSO reductase-like complex (Msed0812-0818), and a novel heterodisulfide reductase-like complex (Msed1542-1550), were also stimulated by RISCs. Furthermore, several hypothetical proteins were found to have strong responses to ferrous iron or RISCs, suggesting additional candidates in iron or sulfur oxidation-related pathways. From this analysis, a comprehensive model for electron transport in M. sedula could be proposed as the basis for examining specific details of iron and sulfur oxidation in this bioleaching archaeon.

2008-10-22 | GSE12044 | GEO

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