Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hydrothermal vent metagenome

ABSTRACT: Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - PIR-30 metagenome

PROVIDER: PRJNA469233 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR7968104_1.fastq.gz	Fastqsanger.gz
	SRR7968104_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV74 metagenome

| PRJNA655094 | ENA

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV67 metagenome

| PRJNA502667 | ENA

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV84 metagenome

| PRJNA469230 | ENA

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV88 metagenome

| PRJNA469231 | ENA

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - Teddybear metagenome

| PRJNA502677 | ENA

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - CV79 metagenome

| PRJNA469229 | ENA

Dissolved organic carbon compounds in deep-sea hydrothermal vent fluids from the East Pacific Rise at 9°50′N

Project description:<p>Deep-sea hydrothermal vents are unique ecosystems that may release chemically distinct dissolved organic matter to the deep ocean. Here, we describe the composition and concentrations of polar dissolved organic compounds observed in low and high temperature hydrothermal vent fluids at 9°50′N on the East Pacific Rise. The concentration of dissolved organic carbon was 46 µM in the low temperature hydrothermal fluids and 14 µM in the high temperature hydrothermal fluids. In the low temperature vent fluids, quantifiable dissolved organic compounds were dominated by water-soluble vitamins and amino acids. Derivatives of benzoic acid and the organic sulfur compound 2,3-dihydroxypropane-1-sulfonate (DHPS) were also present in low and high temperature hydrothermal fluids. The low temperature vent fluids contain organic compounds that are central to biological processes, suggesting that they are a by-product of biological activity in the subseafloor. These compounds may fuel heterotrophic and other metabolic processes at deep-sea hydrothermal vents and beyond.</p>

2017-05-23 | MTBLS428 | MetaboLights

hydrothermal vent metagenome

Project description:Hydrothermal vent microbial communities from East Pacific Rise, Pacific Ocean - 4281-140 metagenome

| PRJNA502672 | ENA

hydrothermal vent metagenome

Project description:Epsilonproteobacteria recovered from East Pacific Rise deep sea hydrothermal vent sulfide chimney

| PRJNA430147 | ENA

Adaptations to high pressure of Nautilia sp. strain PV-1, a piezophilic Epsilonproteobacterium isolated from a deep-sea hydrothermal vent

Project description:Physiological and gene expression studies of deep-sea bacteria under pressure conditions similar to those experienced in their natural habitat are critical to understand growth kinetics and metabolic adaptations to in situ conditions. The Epslilonproteobacterium, Nautilia sp. strain PV1, was isolated from hydrothermal fluids released from an active deep-sea hydrothermal vent at 9°N on the East Pacific Rise. Using a high pressure/high temperature continuous culture system we established that strain PV-1 has the shortest generation time of all known piezophilic microorganisms and we investigated its protein expression pattern in response to different hydrostatic pressures. Proteomic analyses of strain PV-1 grown at 200 Bars and 5 Bars showed that pressure adaptation is not restricted only to stress response or homeoviscous adaptation, but that it is more diversified and protein specific, with a fine and variegated regulation of enzymes involved even in the same metabolic pathway. As previously reported, proteins synthesis, motility, transport and energy metabolism are all affected by pressure, although to different extents. In strain PV-1, low pressure condition seems to activate the synthesis of phage-related proteins and an overexpression of enzymes involved in central carbon metabolism.

2023-05-10 | PXD022895 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data