Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Root metagenome (Taxonomy ID: 1118232)

ABSTRACT: Bacterial endophytes of rice root from Red and laterite zone

PROVIDER: PRJNA471617 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7169730_1.fastq.gz	Fastqsanger.gz
	SRR7169730_2.fastq.gz	Fastqsanger.gz
	SRR7169731_1.fastq.gz	Fastqsanger.gz
	SRR7169731_2.fastq.gz	Fastqsanger.gz
	SRR7169732_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

root metagenome (Taxonomy ID: 1118232)

Project description:Bacterial endophytes of rice root from Gangetic alluvial zone

| PRJNA471586 | ENA

root metagenome (Taxonomy ID: 1118232)

Project description:Bacterial endophytes of rice root from Northern Hill zone

| PRJNA471599 | ENA

root metagenome (Taxonomy ID: 1118232)

Project description:Bacterial endophytes of rice root from Vindhyan Alluvial zone

| PRJNA471590 | ENA

root metagenome (Taxonomy ID: 1118232)

Project description:Endophytic bacterial diversity of rice root

| PRJNA478489 | ENA

root metagenome (Taxonomy ID: 1118232)

Project description:Endophytic bacterial diversity of rice root gall infected with nematodes

| PRJNA478319 | ENA

root metagenome (Taxonomy ID: 1118232)

Project description:Endophytic bacterial metagenome from Terai-Tista alluvial zone

| PRJNA471587 | ENA

Comprehensive gene expression profiling of the rice root system based on developmental stages and tissue types

Project description:The root system is a crucial determinant of plant growth potential because of its important functions, e.g., acquisition of water and nutrients, structural support, and interaction with symbiotic organisms. Elucidating the molecular mechanisms of root development and functions is therefore necessary for improving plant productivity, particularly for crop plants including rice. As an initial step towards developing a comprehensive understanding of the root system, we performed a large-scale transcriptome analysis of the rice root via a combined laser microdissection and microarray analysis approach. We performed comprehensive microarray analysis of a rice crown root using laser microdissection and collected a total of 13 samples (3 replicates for each sample except for one sample, 38 total microarray data) representing 8 different developmental stages along the longitudinal axis and 3 distinct tissue-types along the radial axis at 2 different developmental stages. The 8 developmental stages represent root cap, division zone, elongation zone and maturation zone_I, II, III, IV and V. The 3 tissue-types represent epidermis/exodermis/sclerenchyma, cortex, and endodermis/pericycle/stele. In the maturation zone_V, the cortex consisted largely of aerenchyma (non-living cells) and was not used for the microarray analysis.

2011-10-25 | E-GEOD-30136 | biostudies-arrayexpress

Piriformospora indica on Arabidopsis and barley root material

Project description:Broad-host root endophytes establish long-term interactions with a large variety of plants, thereby playing a significant role in natural and managed ecosystems and in evolution of land plants. To exploit plants as living substrates and to establish a compatible interaction with morphologically and biochemically extremely different hosts, endophytes must respond and adapt to different plant signals and host metabolic states. Here we identified host-adapted colonization strategies and host-specific effector candidates of the mutualistic root endophyte Piriformospora indica by a global investigation of fungal transcriptional responses to barley and Arabidopsis at different symbiotic stages. Additionally we examined the role played by nitrogen in these two diverse associations. Cytological studies and colonization analyses of a barley mutant and fungal RNAi strains show that distinct physiological and metabolic signals regulate host-specific lifestyle in P. indica. This is the foundation for exploring how distinct fungal and host symbiosis determinants modulate biotrophy in one host and saprotrophy in another host and, ultimately, gives hints into the mechanisms underlying host adaptation in root symbioses.

2013-07-22 | GSE47775 | GEO

Piriformospora indica on Arabidopsis and barley root material

2013-07-22 | E-GEOD-47775 | biostudies-arrayexpress

Root hair-expressed genes in rice

Project description:To identifiy root hair-preferred genes in rice, we perform microarray using root hairs sample from don-gin and lon-gin cultivar

2018-01-30 | GSE109811 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data