Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Juan de Fuca FLOCS

ABSTRACT: Juan de Fuca FLOCS Targeted loci environmental

PROVIDER: PRJNA472057 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7187320_1.fastq.gz	Fastqsanger.gz
	SRR7187320_2.fastq.gz	Fastqsanger.gz
	SRR7187321_1.fastq.gz	Fastqsanger.gz
	SRR7187321_2.fastq.gz	Fastqsanger.gz
	SRR7187322_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

Juan de Fuca ridge flank deep sea sediment metagenome

Project description:Juan de Fuca ridge flank deep sea sediment metagenome

| PRJNA901380 | ENA

hydrothermal vent metagenome

Project description:Juan de Fuca Ridge hydrothermal vent uncultured phage metagenome

| PRJNA47471 | ENA

hydrothermal vent metagenome

Project description:Microbial diversity at Hulk Vent in Juan de Fuca Ridge hydrothermal system

| PRJNA246301 | ENA

Project description:Aminicenantia SAGs Sampled from Oceanic Crustal Fluid at the Juan De Fuca Ridge

| PRJNA842252 | ENA

hot springs metagenome

Project description:environmental Targeted loci environmental

| PRJNA362987 | ENA

Epigenetic memory marks determine epiallele stability at loci targeted by de novo DNA methylation

Project description:The transgenerational stability of DNA methylation changes is important in setting up genomic DNA methylation patterns and in the formation and transmission of epialleles. It is generally assumed that DNA methylation changes at genomic regions targeted by the de novo, RNA-directed DNA methylation (RdDM) pathway are unstable. Here, we show that RdDM targets in Arabidopsis can be classified into two groups based on their transgenerational epiallele stability following restoration of NRPD1 function in nrpd1 mutant plants: remethylable loci and non-remethylable loci. Compared to the remethylable loci, non-remethylable ones contain higher levels of the euchromatic marks H3K4me3 and H3K18ac, which interferes with the recruitment of the RdDM molecular machinery and helps to recruit the DNA demethylase ROS1 to antagonize RdDM, respectively. Using targeted de-methylation by CRISPR/dCas9-TET1, we demonstrate that mCG and mCHG are memory marks required for targeting the RdDM machinery to remethylable loci. Our results show that histone and DNA methylation marks are critical in determining the capacity of RdDM target loci to form stable epialleles, and contribute to understanding the formation and transmission of epialleles.

2020-04-17 | GSE140566 | GEO

hydrothermal vent metagenome

Project description:Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge Flank

| PRJNA268250 | ENA

marine metagenome

Project description:Marine hydrothermal vent microbial communities from Juan de Fuca Ridge, Pacific Ocean - sample 1 metagenome

| PRJNA336804 | ENA

marine metagenome

Project description:Marine hydrothermal vent microbial communities from Juan de Fuca Ridge, Pacific Ocean - sample 2 metagenome

| PRJNA336805 | ENA

marine metagenome

Project description:Marine hydrothermal vent microbial communities from Juan de Fuca Ridge, Pacific Ocean - sample 3 metagenome