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Riverine metagenome

ABSTRACT: Freshwater bacterioplankton from a headwater stream raw sequencing reads

PROVIDER: PRJNA472370 | ENA |

REPOSITORIES: ENA

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Dataset's files

Source:

			Action	DRS
	SRR7612600_1.fastq.gz	Fastqsanger.gz
	SRR7612600_2.fastq.gz	Fastqsanger.gz
	SRR7612610_1.fastq.gz	Fastqsanger.gz
	SRR7612610_2.fastq.gz	Fastqsanger.gz
	SRR7612620_1.fastq.gz	Fastqsanger.gz

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Project description:Nitrate-reducing iron(II)-oxidizing bacteria are widespread in the environment contribute to nitrate removal and influence the fate of the greenhouse gases nitrous oxide and carbon dioxide. The autotrophic growth of nitrate-reducing iron(II)-oxidizing bacteria is rarely investigated and poorly understood. The most prominent model system for this type of studies is enrichment culture KS, which originates from a freshwater sediment in Bremen, Germany. To gain insights in the metabolism of nitrate reduction coupled to iron(II) oxidation under in the absence of organic carbon and oxygen limited conditions, we performed metagenomic, metatranscriptomic and metaproteomic analyses of culture KS. Raw sequencing data of 16S rRNA amplicon sequencing, shotgun metagenomics (short reads: Illumina; long reads: Oxford Nanopore Technologies), metagenome assembly, raw sequencing data of shotgun metatranscriptomes (2 conditions, triplicates) can be found at SRA in https://www.ncbi.nlm.nih.gov/bioproject/PRJNA682552. This dataset contains proteomics data for 2 conditions (heterotrophic and autotrophic growth conditions) in triplicates.

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