Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Tokudaia osimensis

ABSTRACT: Tokudaia osimensis Transcriptome or Gene expression

PROVIDER: PRJNA474959 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR8429980.fastq.gz	Fastqsanger.gz
	SRR8429981.fastq.gz	Fastqsanger.gz
	SRR8429982.fastq.gz	Fastqsanger.gz
	SRR8429976.fastq.gz	Fastqsanger.gz
	SRR8429977.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Tokudaia osimensis

Project description:Tokudaia osimensis overview

| PRJNA895513 | ENA

Tokudaia osimensis

Project description:Whole genome sequences of the Amami spiny rat, Tokudaia osimensis

| PRJDB5072 | ENA

Tokudaia osimensis

Project description:Alternate Pseudohaplotype genome sequences of the Amami spiny rat, Tokudaia osimensis

| PRJDB16414 | ENA

Tokudaia osimensis

Project description:Principal pseudohaplotype genome sequences of the Amami spiny rat, Tokudaia osimensis

| PRJDB16491 | ENA

Tokudaia osimensis

Project description:Comparison of the genome sequences between sexes in the Amami spiny rat, Tokudaia osimensis

| PRJDB12028 | ENA

Tokudaia osimensis osimensis

Project description:Hi-C seq and RNA-seq in species, genus Tokudaia

| PRJDB14616 | ENA

Chromosomal-level assembly of Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki genomes.

Project description:Herein, we present the first high-quality long-read-based chromosome-level genome assemblies and gene annotations of the genomes of three endangered Tokudaia species: Tokudaia osimensis, Tokudaia tokunoshimensis, and Tokudaia muenninki. These species, which are endemic to different islands of the Ryukyu Islands, Japan, exhibited unique karyotypes and sex chromosomal characteristics. The genome assemblies generated using PacBio, Illumina, and Hi-C sequence data consisted of 13 (corresponded to 12 autosomes and one X chromosome), 23 (corresponded to 22 autosomes and one X chromosome), and 23 (corresponded to 21 autosomes and the neo- and ancestral X regions) chromosome-level scaffolds that contained 2,445, 2,477, and 2,661 Mbp of sequence data, respectively. Annotations of protein-coding genes were performed using RNA-Seq-based, homology-based, and Ab initio methods. BUSCO completeness values for every species exceeded 96% for genomes and 98% for genes. These data can be an important resource for contributing to our understanding of species genomes resulting from allopatric speciation and provide insights into mammalian sex-determination mechanisms and sex chromosome evolution.

| S-EPMC10739956 | biostudies-literature

Tokudaia tokunoshimensis

Project description:Tokudaia tokunoshimensis overview

| PRJNA1014547 | ENA

Tokudaia muenninki

Project description:Tokudaia muenninki overview

| PRJNA448473 | ENA

Tokudaia muenninki

Project description:Transcriptome analysis from brain, liver, and testis of Tokudaia muenninki

| PRJDB4696 | ENA