Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNAseq of maize stem at three developmental stages

ABSTRACT: RNAseq of maize stem at three developmental stages

PROVIDER: PRJNA476069 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7341731_1.fastq.gz	Fastqsanger.gz
	SRR7341731_2.fastq.gz	Fastqsanger.gz
	SRR7341741_1.fastq.gz	Fastqsanger.gz
	SRR7341741_2.fastq.gz	Fastqsanger.gz
	SRR7341742_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

RNAseq of maize stem at three developmental stages

Project description:Eighteen samples from the low, middle and high hybrid at three development stages were used for RNA sequencing.

2018-06-15 | GSE115796 | GEO

RNAseq of S. stercoralis PV001 strain developmental stages

Project description:RNAseq of S. stercoralis PV001 strain developmental stages

| PRJEB3116 | ENA

Comparative transcriptomes analysis at different developmental stages of seed embryo in maize by RNA-sequencing

Project description:we used two contrasting maize genotypes with differential oil accumulation percentage. High oil content (HOC) maize had 11% oil content while low oil content (LOC) maize had significantly lower oil content (5.4%). Transmission electron microscopy revealed a higher accumulation of oil bodies in the HOC maize embryo as compared to LOC maize. Comparative RNA-sequencing analysis at different developmental stages of seed embryo identified 739 genes that are constantly differentially expressed (DEGs) at all the six developmental stages from 15 days after pollination (DAP) to 40 DAP. KEGG enrichment analysis identified fatty acid metabolism and fatty acid biosynthesis as the most enriched biological pathways contributed by these DEGs. Notably, transcriptional changes are more intense at the early stages of embryo development as compared to later stages. In addition, pathways related to oil biosynthesis and their corresponding genes were more enriched at 30 DAP, which seems to be the key stage for oil accumulation. The study also identified 33 key DEGs involved in fatty acid and triacylglycerols biosynthesis, most of them were up-regulated in HOC, which may shape the differential oil contents in the two contrasting maize. Notably, we uncovered that both acyl-CoA-dependent and acyl-CoA-independent processes are essential for the high oil accumulation in maize embryo.

2019-08-20 | GSE136087 | GEO

Three life stages

Project description:Three life stages

| PRJNA589548 | ENA

Developmental changes in transcriptomes of two key transport tissues in maize kernels: The Maternal Transfer Zone (MATZ) and Basal Endosperm Transfer Layer (BETL)

Project description:Transcriptome profiles of MATZ and BETL tissues are compared across three stages of development. Sugars and other nutrients unloaded from vascular tissues in the MATZ are imported by the BETL for utilization by the developing endosperm. Pronounced changes in gene expression occur in both tissues during kernel development. RNAseq data were obtained from duplicate tissue samples isolated by cryomicrodissection of developing maize kernels at three developmental time points; 8 days post-pollination (DAP), 14 DAP and 20 DAP.

2015-04-03 | E-GEOD-67550 | biostudies-arrayexpress

Transcriptomics analysis of gene expression at three different developmental stages of zebrafish embryos

Project description:To investigate the expression profile of three different developental stages of zebrafish embryos, we then performed gene expression profiling analysis using data obtained from RNA-seq of 3 different developmental of zebrafish embryos.

2022-08-17 | GSE207476 | GEO

RNAseq of S. stercoralis PV001 strain developmental stages

Project description:RNAseq study to examine developmental regulation of S. stercoralis transcripts with a focus on infectious third-stage larvae

2012-06-26 | E-MTAB-1164 | biostudies-arrayexpress

Transcriptomics analysis of gene expression at three different developmental stages of zebrafish embryos

Project description:Transcriptomics analysis of gene expression at three different developmental stages of zebrafish embryos

| PRJNA855894 | ENA

ATAC-Seq using native and iPSC-derived murine retina at three developmental stages.

Project description:ATAC-Seq using native and iPSC-derived murine retina at three developmental stages.

| PRJEB39940 | ENA

Using Multi-Omics Integration to explore differences in the three key developmental stages of Thelephora ganbajun Zang

Project description:In this study our research group has completed the metabolome sequencing of Thelephora ganbajun Zang in three key developmental stages, including mycelium, primordium and fruiting body, aiming to explore the specific substances or special mechanisms that may affect the development of ectomycorrhiza of strain 46 in its entire life history indifferent developmental stages, and to conduct dynamic real-time monitoring of the gene expression products

2023-12-18 | PXD047922 |

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data