Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Neotropical biodiversity genomics

PROVIDER: PRJNA480353 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7508480_1.fastq.gz	Fastqsanger.gz
	SRR7508480_2.fastq.gz	Fastqsanger.gz
	SRR7508481_1.fastq.gz	Fastqsanger.gz
	SRR7508481_2.fastq.gz	Fastqsanger.gz
	SRR7508482_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Project description:Genomics of forensic importance insects in the neotropical region

| PRJNA1003469 | ENA

Project description:LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG)

| PRJNA706923 | ENA

BGE

Project description:Genome skim data from Biodiversity Genomics Europe (BGE)

| PRJEB78703 | ENA

Chemocoding as an identification tool where morphological- and DNA-based methods fall short: Inga as a case study

Project description:The need for species identification and taxonomic discovery has led to the development of innovative technologies for large-scale plant identification. DNA barcoding has been useful, but fails to distinguish among many species in species-rich plant genera, particularly in tropical regions. Here, we show that chemical fingerprinting, or “chemocoding”, has great potential for plant identification in challenging tropical biomes. Using untargeted metabolomics in combination with multivariate analysis, we constructed species-level fingerprints, which we define as chemocoding. We evaluated the utility of chemocoding with species that were defined morphologically and subject to next-generation DNA sequencing in the diverse and recently radiated neotropical genus, Inga (Leguminosae), both at single study sites and across broad geographic scales. Our results show that chemocoding is a robust method for distinguishing morphologically similar species at a single site and for identifying widespread species across continental-scale ranges. Given that species are the fundamental unit of analysis for conservation and biodiversity research, the development of accurate identification methods is essential. We suggest that chemocoding will be a valuable additional source of data for a quick identification of plants, especially for groups where other methods fall short.

2018-01-22 | MTBLS574 | MetaboLights

Project description:Centre for Biodiversity Genomics - DNA Barcodes for Canadian Specimens

| PRJNA472144 | ENA

Embryo seed development: Establishing the network of seed gene expression and analysis of its biodiversity

Project description:gnp3_tri33-arabidoseed. Embryo seed development. WP3: Biodiversity of seed traits: state-of-the-art. Analysis of the expression of small RNAs precursors in the seed development of Arabidopsis thaliana.

2011-04-22 | GSE28311 | GEO

HOPE-Genomics Intervention for the Improvement of Cancer Patient Knowledge of Genomics

Project description:This clinical trial studies the effectiveness of a web-based cancer education tool called Helping Oncology Patients Explore Genomics (HOPE-Genomics) in improving patient knowledge of personal genomic testing results and cancer and genomics in general. HOPE-Genomics is a web-based education tool that teaches cancer/leukemia patients, and patients who may be at high-risk for developing cancer, about genomic testing and provide patients with information about their own genomic test results. The HOPE-Genomics tool may improve patient’s genomic knowledge and quality of patient-centered care. In addition, it may also improve education and care quality for future patients.

| 2378933 | ecrin-mdr-crc

Embryo seed development: Establishing the network of seed gene expression and analysis of its biodiversity

2011-04-22 | E-GEOD-28311 | biostudies-arrayexpress

eqtl analysis (random pair design)-Establishing the network of seed gene expression and analysis of its biodiversity

Project description:gnp3_tri33-arabidoseed - eqtl analysis (random pair design) - WP3 : Biodiversity of seed traits : state of the art - Comparison of the developping seed transcriptome in 160 Bay0/Sha Recombinant Inbred Lines (RILs) at 10 days after pollinisation. Keywords: genotype and ecotype comparison

2009-06-05 | GSE16393 | GEO

seed development-Establishing the network of seed gene expression and analysis of its biodiversity

Project description:gnp3_tri33-arabidoseed - seed development - WP3 : Biodiversity of seed traits : state of the art - This experiment is a time course performed to choose the best harvesting point to maximise the number of detectable transcripts (8, 10, 12 and 14 dap). Keywords: time course

2009-05-30 | GSE16242 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data