Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Identification of the targets of RNA binding protein NSRa [RIP-seq]

ABSTRACT: Identification of the targets of RNA binding protein NSRa [RIP-seq]

PROVIDER: PRJNA480594 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7508450.fastq.gz	Fastqsanger.gz
	SRR7508450_1.fastq.gz	Fastqsanger.gz
	SRR7508450_2.fastq.gz	Fastqsanger.gz
	SRR7508451.fastq.gz	Fastqsanger.gz
	SRR7508452.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Identification of AtGRP7 targets by RIP-seq

Project description:A key function for RNA-binding proteins in orchestrating plant development and environmental responses is well established. However, the lack of a genome-wide view on their in vivo binding targets and binding landscapes represents a gap in understanding the mode of action of plant RNA-binding proteins. Here, we conducted RNA Immunoprecipitation (RIP-seq) for genome-wide determining the binding repertoire of the circadian clock-regulated Arabidopsis thaliana glycine-rich RNA-binding protein AtGRP7.

2017-09-28 | GSE99464 | GEO

Genomewide identification of ANAC060 binding targets

Project description:Genomewide identification of ANAC060 binding targets

| PRJNA507758 | ENA

Identification of YAP-associated lncRNAs via RNA-binding protein immunoprecipitation sequencing (RIP-seq) experiments

Project description:The analysis of the RNA-binding protein immunoprecipitation sequencing (RIP-seq) experiment is performed to identified YAP-specific binding lncRNAs.

2019-10-29 | GSE129535 | GEO

RNA-binding protein immunoprecipitation (RIP)and RNA sequencing

Project description:RNA-binding protein immunoprecipitation (RIP)and RNA sequencing

| PRJNA555809 | ENA

Transcriptome-wide identification of IGF2BP binding RNAs by RIP-seq.

Project description:We identified the mRNA targets of the insulin-like growth factor-2 (IGF2) mRNA-binding proteins 1, 2, and 3 (IGF2BP1/2/3) by RNA immunoprecipitation and sequencing (RIP-seq). HEK293T cells transfected with Flag-tagged IGF2BP1/2/3 plasmids were expanded and UV-crosslinked before harvest. We performed RIP of individual IGF2BP using anti-Flag antibody from nuclear extractions, and identified the associated mRNAs by next generation sequencing. More than 5000 transcripts, including protein coding and non-coding transcripts, were identified from each RIP-seq sample.

2018-03-15 | GSE90639 | GEO

Identification of YAP-associated lncRNAs via RNA-binding protein immunoprecipitation sequencing (RIP-seq) experiments

Project description:Identification of YAP-associated lncRNAs via RNA-binding protein immunoprecipitation sequencing (RIP-seq) experiments

| PRJNA531678 | ENA

RNA-binding protein immunoprecipitation (RIP)and RNA sequencing

Project description:We report the result of lncRNAs binding to Hes1 in colon cancer SW480 cells using Magna RIP™ RNA-Binding Protein Immunoprecipitation Kit (Millipore, MD, USA) following the manufacturer's instructions, the RNAs were analyzed by Illumina HiSeq 2500 Sequencing.

2019-07-20 | GSE134551 | GEO

RIp-chip experiments with the Scw1 RNA-binding protein on ageing samples

Project description:We have used RIp-chip to identify mRNAs that coprecipitate with specific Scw1 RNA-binding protein on ageing samples

2019-06-01 | E-MTAB-7618 | biostudies-arrayexpress

Identification of LC3B's binding mRNAs through a n-RIP-seq

Project description:Identification of LC3B's binding mRNAs through a n-RIP-seq

| PRJNA1020852 | ENA

Identification of RNA targets of EB1 using RIP-seq in Drosophila ovaries

Project description:Identification of RNA targets of EB1 using RIP-seq in Drosophila ovaries

| PRJEB38201 | ENA