Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Whole-genome bisulfite sequencing of wild-type and thick aleurone 2-1 (ta2-1) mutant in rice

ABSTRACT: Whole-genome bisulfite sequencing of wild-type and thick aleurone 2-1 (ta2-1) mutant in rice

PROVIDER: PRJNA481373 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7527750_1.fastq.gz	Fastqsanger.gz
	SRR7527750_2.fastq.gz	Fastqsanger.gz
	SRR7527751_1.fastq.gz	Fastqsanger.gz
	SRR7527751_2.fastq.gz	Fastqsanger.gz
	SRR7527749_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Whole-genome bisulfite sequencing of wild-type and thick aleurone 2-1 (ta2-1) mutant in rice

Project description:Using whole genome bisulfite sequencing to provide single-base resolution of DNA methylation status in the endosperm of wild-type (ZH11) and ta2-1 rice plants, and identify hypermethylated regions in ta2-1.

2018-11-14 | GSE117187 | GEO

Rice aleurone cytosolic CFMS analysis

Project description:Rice aleurone cytosolic proteome was fractionized by SEC and analyzed by LC-MSMS.

2021-06-17 | PXD021450 | Pride

Developing rice endosperm at seven days after flowering: Aleurone layers vs central starchy endosperm

Project description:Transcriptional profiling of developing rice endosperm at seven days after flowering comparing aleurone layers with central starchy endosperm. Cereal productivity is dependent on the accumulation of storage compounds in the endosperm, a nutritive tissue that is composed of aleurone cells in the outermost regions and starchy endosperm in the inner region. The transcriptional analyses provides clues to the molecular basis for different metabolic pathways in response to the spatial and nutritional differences between rice aleurone cells and starchy endosperm.

2012-11-27 | GSE42489 | GEO

Developing rice endosperm at seven days after flowering: Aleurone layers vs central starchy endosperm

2012-11-27 | E-GEOD-42489 | biostudies-arrayexpress

Probing the Existence of an Alternative Gibberellin Receptor(s) in Rice Aleurone Cells

Project description:Many years after the discovery of GID1 as the GA receptor, the belief in the existence of GA-binding protein (GBP) in aleurone cells still persists. Actually, some recent reviews and textbooks still contain information about the possibility of an alternative GA perception mechanism mediated by GBPs. Thus, to finally clarify this issue, we examined the expression of GA-regulated genes using rice embryoless half-seeds of four kinds of GA signaling mutants, each one independently carrying mutated GID1, DELLA, and GA-related F-box, which are all encoded by single genes in rice, allowing for convenient study of the GA perception system. The comprehensive microarray analysis using these rice mutants revealed that all genes tested to be responsive to GA in the wild-type (WT) aleurone cells consistently did not respond to GA in the gid1 or slr1 mutant.

2014-12-19 | GSE64290 | GEO

Probing the Existence of an Alternative Gibberellin Receptor(s) in Rice Aleurone Cells

2014-12-19 | E-GEOD-64290 | biostudies-arrayexpress

A co-fractionation mass spectrometry-based prediction of protein complex assemblies in the developing rice aleurone-subaleurone

Project description:Multiprotein complexes execute and coordinate diverse cellular processes such as organelle biogenesis, vesicle trafficking, cell signaling, and metabolism. Knowledge about their composition and localization provides useful clues about the mechanisms of cellular homeostasis and systems-level control. This is of great biological importance and practical significance in heterotrophic rice (Oryza sativa) endosperm and aleurone-subaleurone tissues, which are a primary source of seed vitamins and stored energy. Dozens of protein complexes have been implicated in the synthesis, transport, and storage of seed proteins, lipids, vitamins, and minerals. Mutations in protein complexes that control RNA transport result in aberrant endosperm with shrunken and floury phenotypes, significantly reducing seed yield and quality. The purpose of this study was to broadly predict protein complex composition in the aleurone-subaleurone layers of developing rice seeds using co-fractionation mass spectrometry. Following orthogonal chromatographic separations of biological replicates, thousands of protein elution profiles were subjected to distance-based clustering to enable large-scale multimerization state measurements and protein complex predictions. The predicted complexes had predicted functions across diverse functional categories, including novel heteromeric RNA binding protein complexes that may influence seed quality. This effective and open-ended proteomics pipeline provides useful clues about systems-level post-translational control during the early stages of rice seed development.

2022-02-17 | PXD022357 | Pride

Microarray data from barley aleurone

Project description:The phytohormone gibberellic acid (GA) is well known to promote seed germination in plants. One of its functions is to stimulate the production of hydrolytic enzymes in the aleurone and their secretion to the adjacent endosperm. The storage in the endosperm is thus degraded by these hydrolases into small molecules, which are utilized as nutrients for embryo growth to establish the young seedling. ABA in contrast plays antagonistic role to GA to keep seed in dormancy. Cereal aleurone has been established as a model system to investigate giberrellin (GA) and abscisic acid (ABA) responses. Using Barley 1 GeneChip, we examined the mRNA accumulation of over 22 000 genes in barley aleurone treated with GA, ABA, GA plus ABA, and sln1 mutant. Barley aleurone tissues were separated from half-seed without embryo. Three independent RNA samples for each treatment including the control without any hormone were extracted and hybridized onto Affymetrix microarrays. We also did microarray in three replications for sln1 mutant aleurone without hormone treatment.

2010-01-01 | E-GEOD-18758 | biostudies-arrayexpress

Microarray data from barley aleurone

2010-01-01 | GSE18758 | GEO

Whole genome bisulfite sequencing of ros1-1 mutant and C24 wild-type (WT)

Project description:Using whole genome bisulfite sequencing to provide single-base resolution of DNA methylation status in ros1-1 mutant and C24 WT

2016-11-01 | GSE76382 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data