Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Operon complexity in Rhodobacter capsulatus revealed by integration of dRNA-seq and RNA-seq data

ABSTRACT: Operon complexity in Rhodobacter capsulatus revealed by integration of dRNA-seq and RNA-seq data

PROVIDER: PRJNA482408 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Operon complexity in Rhodobacter capsulatus revealed by integration of dRNA-seq and RNA-seq data

Project description:We report a complex operon architecture for R. capsulatus: operons with multiple TSSs and TTSs, genomic regions of high transcriptional activity and novel transcripts. In addition, we present a new 5' and 3' targeted sequencing method for the Ion Torrent PGM. TEX+ and TEX- indicates if the dRNA-seq library was treated with Terminator 5'-Phosphate-Dependent Exonuclease or not. Treatment with TEX degrades every RNA that does not have a 5'-PPP.

2022-12-06 | GSE117537 | GEO

Rhodobacter capsulatus SB1003 under singlet oxygen stress

Project description:Global transcriptome analyses at growth before and after 10 min of photooxidative stress were applied to monitor stress dependent gene expression in the alpha-proteobacterium Rhodobacter capsulatus. Transcriptome profiles of pigmented cultures with high aeration were monitored before and after the onset of singlet oxygen stress.

2020-01-24 | GSE134200 | GEO

Transcriptome and proteome analyses of the CtrA regulon and growth-phase regulation in Rhodobacter capsulatus

Project description:The samples in this series were used to analyze the transcriptome of the CtrA regulon using wild type (SB1003) and ctrA mutant (SBRM1) strains of Rhodobacter capsulatus. As well, the transcriptome of growth phase regulation in R. capsulatus SB1003 between log and stationary phases was determined.

2010-04-08 | GSE18149 | GEO

Rhodobacter capsulatus strain:A12

Project description:Rhodobacter capsulatus strain: A12

| PRJNA659097 | ENA

Rhodobacter capsulatus strain:B41

Project description:Rhodobacter capsulatus Genome sequencing

| PRJNA298686 | ENA

Rhodobacter capsulatus YW2

Project description:Rhodobacter capsulatus YW2 Genome sequencing and assembly

| PRJNA225628 | ENA

Rhodobacter capsulatus DE442

Project description:Rhodobacter capsulatus DE442 Genome sequencing and assembly