Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

RNA secondary structome of different cellular compartments in human and mouse

ABSTRACT: RNA secondary structome of different cellular compartments in human and mouse

PROVIDER: PRJNA483400 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7618810.fastq.gz	Fastqsanger.gz
	SRR7618820.fastq.gz	Fastqsanger.gz
	SRR7618830.fastq.gz	Fastqsanger.gz
	SRR7618840.fastq.gz	Fastqsanger.gz
	SRR7618811.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 44

Similar Datasets

RNA secondary structome of different cellular compartments in human and mouse

Project description:We resolved the RNA secondary structure of three cellular compartments including chromatin (ch), nucleoplasm(np) and cytoplasm(cy) in HEK293 and mES cells based on in vivo click selective 2'-hydroxyl acylation and profiling experiment (icSHAPE). We analyze the RNA structure dynamics among cellular compartments and different RNA processings. Also, we study which factors perturb the RNA structures.

2018-07-31 | GSE117840 | GEO

Small RNA Sequencing of Different Blood Compartments

Project description:Small RNA Sequencing of Different Blood Compartments

| PRJNA823739 | ENA

Multi-omics analysis of green lineage osmotic stress pathways unveils crucial roles of different cellular compartments

Project description:Multi-omics analysis of green lineage osmotic stress pathways unveils crucial roles of different cellular compartments

| PRJNA1083559 | ENA

RNA secondary structome of different cell lines

Project description:RNA secondary structome of different cell lines

| PRJNA608297 | ENA

Microbial diversity in different compartments of an aquaponics system

Project description:Microbial diversity in different compartments of an aquaponics system

| PRJEB15038 | ENA

Small RNA Sequencing of Different Blood Compartments

Project description:We studied microRNA levels in different blood compartments (erythrocytes, buffy coat, platelets (gel-filtrated or washed), PRP, PPP, and the supernatant of Convulxin-stimulated platelets). The aim of this study was to identify/confirm platelet-enriched miRNAs as biomarkers of platelet activation.

2022-04-12 | GSE200251 | GEO

Comparison of the transcriptome across cardiac cell types and cellular compartments

Project description:Comparison of the transcriptome across cardiac cell types and cellular compartments

| PRJNA675480 | ENA

Single-cell RNA-sequencing of Gli1-positive cells from different compartments of the adult mouse epidermis

Project description:Single-cell RNA-sequencing of Gli1-positive cells from different compartments of the adult mouse epidermis

| PRJEB30470 | ENA

Multi-omics analysis of green lineage osmotic stress pathways unveils crucial roles of different cellular compartments

Project description:Maintenance of water homeostasis is a fundamental cellular process required by all living organisms. Here, we use the single-celled green alga Chlamydomonas reinhardtii to establish a foundational understanding of osmotic-stress signaling pathways through transcriptomics, phosphoproteomics, and functional genomics approaches. Comparison of pathways identified through these analyses with yeast and Arabidopsis allowed us to infer their evolutionary conservation and divergence across these lineages. 76 genes, acting across diverse cellular compartments, were found to be important for osmotic-stress tolerance in Chlamydomonas through their functions in cytoskeletal organization, potassium transport, vesicle trafficking, mitogen-activated protein kinase and chloroplast signaling. We show that homologs for five of these genes have conserved functions in stress tolerance in Arabidopsis and reveal a novel PROFILIN-dependent stage of acclimation affecting the actin cytoskeleton that ensures tissue integrity upon osmotic stress. This study highlights the conservation of the stress response in algae and land plants and establishes Chlamydomonas as a unicellular plant model system to dissect the osmotic stress signaling pathway.

2024-03-07 | GSE260814 | GEO

Phosphoproteomics of mouse secondary neurospheres

Project description:Differential analysis of phosphorylated proteins in mouse secondary neurospheres cultured with rcHIL3 or MHM + GF for 3 or 7 days in vitro.

2022-10-14 | PXD037411 | JPOST Repository

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data