Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli strain:BL21 (DE3) pLysS

ABSTRACT: Escherichia coli strain:BL21 (DE3) pLysS Genome sequencing and assembly

PROVIDER: PRJNA484016 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Time series of Escherichia coli BL21(DE3) growth curve, tiling arrays

Project description:Experimentally mapped transcriptome structure of Escherichia coli BL21(DE3) by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 10 nt).

2017-01-13 | GSE93565 | GEO

Time series of Escherichia coli BL21(DE3) after temperature upshift from 37°C to 42°C, tiling arrays

Project description:Heat-responsive and time-resolved changes in transcriptome of E. coli BL21(DE3) Experimentally mapped transcriptome structure of Escherichia coli BL21(DE3) by hybridizing total RNA (including RNA species <200 nt) to genome-wide high-density tiling arrays (60 mer probes tiled every 10 nt).

2020-04-12 | GSE148034 | GEO

Escherichia coli BL21(DE3)

Project description:Escherichia coli BL21(DE3) Genome sequencing

| PRJNA203015 | ENA

Escherichia coli BL21(DE3)

Project description:Escherichia coli BL21(DE3) Genome sequencing

| PRJNA730534 | ENA

Escherichia coli BL21(DE3)

Project description:Escherichia coli BL21(DE3) Genome sequencing and assembly

| PRJNA679797 | ENA

Escherichia coli strain:BL21 (DE3)

Project description:Escherichia coli BL21 (DE3) Resequencing

| PRJNA520351 | ENA

Escherichia coli BL21(DE3)

Project description:Escherichia coli BL21(DE3) Raw sequence reads

| PRJNA932940 | ENA

Escherichia coli BL21(DE3)

Project description:Escherichia coli BL21(DE3) Transcriptome or Gene expression

| PRJNA952165 | ENA

Transcriptomic response of the xylose-selective strain derived from E. coli BL21(DE3) growing on xylose or glucose

Project description:Different genetic engineering strategies have been proposed to obtain E. coli strains that selectively consume xylose. In this study, a previously reported strategy for obtaining a xylose-selective strain in E. coli K12 was applied to E. coli BL21 (DE3). While this approach resulted in the expected xylose-selective phenotype, a low xylose consumption rate was recorded when the strain was grown on a mixture of xylose and glucose. To enhance xylose consumption, a variant of the transcriptional activator XylR was expressed. The resulting strain not only exhibited an improved capacity to consume xylose but also slightly recovered the ability to consume glucose. The aim of the microarray analysis was to identify the transcriptional changes associated with glucose assimilation in the BL21(DE3) derived xylose-selective strain.

2024-10-01 | GSE277741 | GEO

Microaerobic fermentation alters lactose metabolism in Escherichia coli

Project description:We report the effect of oxygenation state in lactose grown escherichia coli producing recombinant proteins. To shed more light on the mechanistic correlation between the uptake of lactose and dissolved oxygen, a comprehensive study has been undertaken with the E. coli BL21 (DE3) strain. Differences in consumption pattern of lactose, metabolites, biomass and product formation due to aerobiosis have been investigated. Transcriptomic profiling of metabolic changes due to aerobic process and microaerobic process during protein formation phase has been studied and the results provide a deeper understanding of protein production in E. coli BL21 (DE3) strains with lactose based promoter expression systems.This study also provides a scientific understanding of escherichia coli metabolism upon oxygen fluctuations.

2020-05-18 | GSE135698 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data