Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Zootoca vivipara

ABSTRACT: Zootoca vivipara overview

PROVIDER: PRJNA484040 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR11872531_1.fastq.gz	Fastqsanger.gz
	ERR11872531_2.fastq.gz	Fastqsanger.gz
	ERR11872532_1.fastq.gz	Fastqsanger.gz
	ERR11872532_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 1165

Similar Datasets

Zootoca vivipara

Project description:Zootoca vivipara Raw sequence reads

| PRJNA657575 | ENA

Zootoca vivipara

Project description:Zootoca vivipara Targeted Locus (Loci)

| PRJNA472940 | ENA

Zootoca vivipara

Project description:Zootoca vivipara - ventral skin RNA-seq

| PRJNA850946 | ENA

Zootoca vivipara isolate:ELT05324

Project description:Chromosome-level assembly of the common lizard (Zootoca vivipara) genome

| PRJNA610958 | ENA

Eleocharis vivipara

Project description:Eleocharis vivipara overview

| PRJNA1205438 | ENA

Chromosome-Level Assembly of the Common Lizard (Zootoca vivipara) Genome.

Project description:Squamate reptiles exhibit high variation in their phenotypic traits and geographical distributions and are therefore fascinating taxa for evolutionary and ecological research. However, genomic resources are very limited for this group of species, consequently inhibiting research efforts. To address this gap, we assembled a high-quality genome of the common lizard, Zootoca vivipara (Lacertidae), using a combination of high coverage Illumina (shotgun and mate-pair) and PacBio sequencing data, coupled with RNAseq data and genetic linkage map generation. The 1.46-Gb genome assembly has a scaffold N50 of 11.52 Mb with N50 contig size of 220.4 kb and only 2.96% gaps. A BUSCO analysis indicates that 97.7% of the single-copy Tetrapoda orthologs were recovered in the assembly. In total, 19,829 gene models were annotated to the genome using a combination of ab initio and homology-based methods. To improve the chromosome-level assembly, we generated a high-density linkage map from wild-caught families and developed a novel analytical pipeline to accommodate multiple paternity and unknown father genotypes. We successfully anchored and oriented almost 90% of the genome on 19 linkage groups. This annotated and oriented chromosome-level reference genome represents a valuable resource to facilitate evolutionary studies in squamate reptiles.

| S-EPMC7643610 | biostudies-literature

rZooViv

Project description:Zootoca vivipara (common lizard)

| PRJEB65185 | ENA

Eleocharis vivipara

Project description:Transcriptome sequences of Eleocharis vivipara

| PRJDB3464 | ENA

Isometra vivipara

Project description:Isometra vivipara Transcriptome or Gene expression

| PRJNA299471 | ENA

Poecilia vivipara

Project description:Poecilia vivipara exposed to sanitary sewage