Marine metagenome
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA484055 | ENA |
REPOSITORIES: ENA
Similar Datasets
Project description:Eukaryotic genomes reconstructed from metagenomes
| PRJNA398281 | ENA
Project description:Metagenomic approaches have revealed unprecedented genetic diversity within microbial communities across vast expanses of the world’s oceans. Linking this genetic diversity with key metabolic and cellular activities of microbial assemblages is a fundamental challenge. Here we report on a collaborative effort to design MicroTOOLs (Microbiological Targets for Ocean Observing Laboratories), a high-density oligonucleotide microarray that targets functional genes of diverse taxa in pelagic and coastal marine microbial communities. MicroTOOLs integrates nucleotide sequence information from disparate data types: genomes, PCR-amplicons, metagenomes, and metatranscriptomes. It targets 19 400 unique sequences over 145 different genes that are relevant to stress responses and microbial metabolism across the three domains of life and viruses. MicroTOOLs was used in a proof-of-concept experiment that compared the functional responses of microbial communities following Fe and P enrichments of surface water samples from the North Pacific Subtropical Gyre. We detected transcription of 68% of the gene targets across major taxonomic groups, and the pattern of transcription indicated relief from Fe limitation and transition to N limitation in some taxa. Prochlorococcus (eHLI), Synechococcus (sub-cluster 5.3) and Alphaproteobacteria SAR11 clade (HIMB59) showed the strongest responses to the Fe enrichment. In addition, members of uncharacterized lineages also responded. The MicroTOOLs microarray provides a robust tool for comprehensive characterization of major functional groups of microbes in the open ocean, and the design can be easily amended for specific environments and research questions.
2013-03-07 | GSE44448 | GEO
Project description:TPA_asm: The OceanDNA MAG catalog: 52,325 prokaryotic genomes reconstructed from various marine environments
| PRJDB11811 | ENA
Project description:Marine microalgae (phytoplankton) mediate almost half of the worldwide photosynthetic carbon dioxide fixation and therefore play a pivotal role in global carbon cycling, most prominently during massive phytoplankton blooms. Phytoplankton biomass consists of considerable proportions of polysaccharides, substantial parts of which are rapidly remineralized by heterotrophic bacteria. We analyzed the diversity, activity and functional potential of such polysaccharide-degrading bacteria in different size fractions during a diverse spring phytoplankton bloom at Helgoland Roads (southern North Sea) at high temporal resolution using microscopic, physicochemical, biodiversity, metagenome and metaproteome analyses.
2024-01-15 | PXD046705 | Pride
Project description:Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511 metagenome
| PRJNA365003 | ENA
Project description:Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 metagenome
| PRJNA365004 | ENA
Project description:Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 metagenome
| PRJNA365017 | ENA
Project description:Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405 metagenome
| PRJNA365019 | ENA
Project description:Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412 metagenome
| PRJNA365020 | ENA
Project description:Pelagic marine microbial communities from North Sea - COGITO_mtgs_120503 metagenome
| PRJNA365022 | ENA