Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Australia animal feces and fresh water

ABSTRACT: Australia animal feces and fresh water Metagenome

PROVIDER: PRJNA484387 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7643570_1.fastq.gz	Fastqsanger.gz
	SRR7643570_2.fastq.gz	Fastqsanger.gz
	SRR7643580_1.fastq.gz	Fastqsanger.gz
	SRR7643580_2.fastq.gz	Fastqsanger.gz
	SRR7643590_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 166

Similar Datasets

fresh water metagenome

Project description:fresh water metagenome Targeted loci

| PRJNA483954 | ENA

fresh mouse feces metagenome Raw sequence reads

Project description:fresh mouse feces metagenome Raw sequence reads Metagenome

| PRJNA725099 | ENA

Scourfieldia caeca isolate:fresh water

Project description:Scourfieldia caeca isolate:fresh water Genome sequencing

| PRJNA592406 | ENA

Novosphingobium sp. MW5 isolate:fresh water

Project description:Novosphingobium sp. MW5 isolate:fresh water Genome sequencing and assembly

| PRJNA893413 | ENA

Roseococcus microcysteis strain:NIBR12 | isolate:Fresh water

Project description:Roseococcus microcysteis strain:NIBR12 | isolate:Fresh water Genome sequencing

| PRJNA662565 | ENA

feces and environmental water samples

Project description:feces and environmental water samples Raw sequence reads

| PRJNA743723 | ENA

Diversity of bacteria strains isolated from fresh water

Project description:Diversity of bacteria strains isolated from fresh water

| PRJEB22011 | ENA

Extracellular miRNAs in serum and feces of mice exposed to high-dose radiation

Project description:Exposure to high-dose radiation causes life-threatening serious intestinal damage. Histological analysis is the most accurate method for judging the extent of intestinal damage after death. However, it is difficult to predict the extent of intestinal damage to body samples. Here we focused on extracellular microRNAs (miRNAs) released from cells and investigated miRNA species that increased or decreased in serum and feces using a radiation-induced intestinal injury mouse model. A peak of small RNA of 25–200 nucleotides was detected in mouse serum and feces 72 h after radiation exposure, and miRNA presence in serum and feces was inferred. MiRNAs expressed in the small intestine and were increased by more than 2.0-fold in serum or feces following a 10 Gy radiation exposure were detected by microarray analysis and were 4 in serum and 19 in feces. In this study, miR-375-3p, detected in serum and feces, was identified as the strongest candidate for a high-dose radiation biomarker in serum and/or feces using a radiation-induced intestinal injury model.

2023-12-15 | GSE247876 | GEO

Synechocystis sp. PCC 6803 isolate:fresh water

Project description:Synechocystis sp. PCC 6803 isolate:fresh water Transcriptome or Gene expression

| PRJNA631950 | ENA

Small RNA Sequencing facilitates quantitative analysis of miRNA expression in feces from mice during DSS-induced colitis and the recovery phase

Project description:Mice were exposed to 2.5% DSS (MW 36,000–50,000, MP Biomedicals) prepared in autoclaved drinking water for five days, after which they were provided DSS-free drinking water for 13 days. On day 12, 16.7% of mice (20 of 120) whose body weight returned to the same level as on day 1 (the change of body weight was less than 0.5 g) and exhibited an DAI of 0 or 1.00, were used as “well-recovered” mice. To identify which fecal miRNAs were affected during DSS-induced colitis and the recovery phase, we performed small RNA sequencing in feces obtained from well-recovered mice on days 0, 5, and 12 of the treatment regimen.

2021-01-28 | GSE165648 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data