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Transcriptomic analysis of plant Cd-regulated genes in the ericoid mycorrhizal symbiosis

ABSTRACT: Transcriptomic analysis of plant Cd-regulated genes in the ericoid mycorrhizal symbiosis

PROVIDER: PRJNA489502 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR7790570.fastq.gz	Fastqsanger.gz
	SRR7790580.fastq.gz	Fastqsanger.gz
	SRR7790571.fastq.gz	Fastqsanger.gz
	SRR7790572.fastq.gz	Fastqsanger.gz
	SRR7790573.fastq.gz	Fastqsanger.gz

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Transcriptomic analysis of plant Cd-regulated genes in the ericoid mycorrhizal symbiosis

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Transcriptomic analysis of fungal Cd-regulated genes in the ericoid mycorrhizal symbiosis

Project description:Illumina HiSeq2000 technology was used to generate mRNA profiles from Oidiodendron maius free-living mycelium and Vaccinium myrtillus mycorrhizal roots with or without Cadmium treatment. 150bp reads were generated and aligned to the O.maius reference transcripts using CLC Genomics Workbench 8

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affy_ams_maize-Cell wall maize mutant during arbuscular mycorrhizal symbiosis

Project description:affy_ams_maize - aafy_ams_maize - Main objectives of this study: - role of plant cell wall during AM symbiosis - regulation pattern during AM symbiosis - understanding of the original mycorrhizal phenotype of bm4 - search of candidate-genes to study AM symbiosis-After 7 days in phytochambers, plantlets were transplanted in 2L of humidified bedrock with 3000 spores for inoculation conditions or without spore for mock conditions then plants have grown in greenhouse. Maize roots have been sampled 7 weeks post-inoculation and freezed in liquid nitrogen then stocked at -80°C. Total RNA was isolated from frozen root tissue by using the RNeasy Plant Mini Kit (Qiagen) following the manufacturer’s instructions. Keywords: treated vs untreated comparison

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affy_ams_maize-Cell wall maize mutant during arbuscular mycorrhizal symbiosis

Project description:affy_ams_maize - aafy_ams_maize - Main objectives of this study: - role of plant cell wall during AM symbiosis - regulation pattern during AM symbiosis - understanding of the original mycorrhizal phenotype of bm4 - search of candidate-genes to study AM symbiosis-After 7 days in phytochambers, plantlets were transplanted in 2L of humidified bedrock with 3000 spores for inoculation conditions or without spore for mock conditions then plants have grown in greenhouse. Maize roots have been sampled 7 weeks post-inoculation and freezed in liquid nitrogen then stocked at -80M-BM-0C. Total RNA was isolated from frozen root tissue by using the RNeasy Plant Mini Kit (Qiagen) following the manufacturerM-bM-^@M-^Ys instructions. Keywords: treated vs untreated comparison 8 arrays - maize

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