Project description:MDS patients are characterized as the deletion in chromosome 17. We generated induced pluripotent stem cells (iPSCs) from MDS fibroblasts. We performed SNP microarray analysis using Affymetrix axiom EUR array platform. Affymetrix axiom EUR arrays were performed according to the manufacturer's directions on DNA extracted from MDS fibroblasts and iPSCs.

2013-11-26 | E-GEOD-52691 | biostudies-arrayexpress

Transdisciplinary Studies of Genetic Variation in Colorectal Cancer (CORECT): Axiom Colorectal Cancer

Project description:Transdisciplinary Studies of Genetic Variation in Colorectal Cancer (CORECT): Axiom Colorectal Cancer

| PRJNA551703 | ENA

Transdisciplinary Studies of Genetic Variation in Colorectal Cancer (CORECT): Axiom Colorectal Cancer

Project description:Transdisciplinary Studies of Genetic Variation in Colorectal Cancer (CORECT): Axiom Colorectal Cancer

| PRJNA551704 | ENA

Axiom Genome-Wide Chicken Array of Broiler Chickens

Project description:DNA was isolated from whole red blood cells from various lines and crosses of broiler chickens. DNA was genotyped using Axiom genome-wide chicken array and cel files were analyzed using Axiom Analysis Suite Software (version 3.0.1) with Gallus gallus 5.0 using the software's Best Practices for agricultural animals. The results were exported (Genotyping_Data-3-21-2018.vcf) for all genotype calls and text file of all SNPs with >= 97% call rate rate was also produced for filtering the VCF file (ALL_SNPSs_with_Call_Rate_97_Plus_3-21-2018).

2019-05-25 | GSE131764 | GEO

Homo sapiens

Project description:Transdisciplinary Research Into Cancer of the Lung (TRICL)

| PRJNA276930 | ENA

Axiom Sugarcane100K SNP array data for sugarcane mapping population

Project description:To accelerate genetic studies in sugarcane, an Axiom Sugarcane100K single nucleotide polymorphism (SNP) array was designed and customized in this study. Target enrichment sequencing 300 sugarcane accessions selected from the world collection of sugarcane and related grass species yielded more than four million SNPs, from which a total of 31,449 single dose (SD) SNPs and 68,648 low dosage (33,277 SD and 35,371 double dose) SNPs from two datasets respectively were selected and tiled on Affymetrix Axiom SNP array. Most of selected SNPs (91.77%) were located within genic regions (12,935 genes), with an average of 7.1 SNPs/gene according to sorghum gene models. This newly developed array was used to genotype 469 sugarcane clones, including one F1 population derived from cross between Green German and IND81-146, one selfing population derived from CP80-1827, and 11 diverse sugarcane accessions as controls. Results of genotyping revealed a high polymorphic SNP rate (77.04%) among the 469 samples. Three linkage maps were constructed by using SD SNP markers, including a genetic map for Green German with 3,482 SD SNP markers spanning 3,336 cM, a map for IND81-146 with 1,513 SD SNP markers spanning 2,615 cM, and a map for CP80-1827 with 536 SD SNP markers spanning 3,651 cM. Quantitative trait loci (QTL) analysis identified a total of 18 QTLs controlling Sugarcane yellow leaf virus resistance segregating in the two mapping populations, harboring 27 disease resistant genes. This study demonstrated the successful development and utilization of a SNP array as an efficient genetic tool for high throughput genotyping in highly polyploid sugarcane.

2019-12-17 | GSE128450 | GEO

Homo sapiens

Project description:Transdisciplinary Research Into Cancer of the Lung (TRICL) - Meta-analysis

| PRJNA276931 | ENA

Affymetrix SNP array data for two parents and their 326 progenies and other 143 registered tea cultivars

Project description:For developing the more SNPs and new high-density genetic linkage map of tea plant, two parents and their 326 progenies and 147 registered tea cultivars was sequencing by newly developed Affymetrix Axiom genotyping technology

2022-03-09 | GSE182082 | GEO

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