Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: RADseq in Dactylorhiza and related genera

PROVIDER: PRJNA489792 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7802050.fastq.gz	Fastqsanger.gz
	SRR7802060.fastq.gz	Fastqsanger.gz
	SRR7802070.fastq.gz	Fastqsanger.gz
	SRR7802080.fastq.gz	Fastqsanger.gz
	SRR7802090.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 225

Similar Datasets

Marasmiellus

Project description:Marasmiellus and related genera

| PRJEB46607 | ENA

Epulorhiza-responsive proteins found in tubers of Dactylorhiza

Project description:Orchid (Dactylorhiza) tubers after fungal inoculation.

2022-06-13 | PXD025095 | Pride

Dactylorhiza majalis

Project description:Dactylorhiza majalis overview

| PRJNA1151771 | ENA

RADseq for tumour mutation burden estimation and mutation signature analysis.

Project description:The utility of RADseq in an experimental setting is also demonstrated, based on our chasacterisation of an APOBEC mutation signature in an APOBEC3A transfected mouse cell line. 0D5 cells, derived from SSM3 cells, were co-transfected with a mixture containing pcDNA3.1 vectors expressing either APOBEC3A or APOBEC3B (kindly donated by Vincent Caval), pcDNA3.1 construct expressing deaminase null APOBEC3A linked to a uracil deglycosylase construct and a plasmid encoding mutant GFP and WT mCherry that is a reporter for APOBEC mutagenesis. Cells were grown, and gDNA extracted, prior to preparation of RADseq libraries using a PstI- MspI double-digest. Libraries underwent a Pippin Prep to select fragments in the size range of 220-520 bp (genomic sequence plus 148 bp of adapters). Single-end sequencing (1x101bp) was performed on an Illumina NovaSeq6000 utilizing v1.5 chemistry. Reads were aligned to mm10 using bwa mem and variants called using the GATK4 pipeline.

2023-06-30 | GSE234146 | GEO

Project description:Plastid sequences of Dactylorhiza

| PRJNA526233 | ENA

Dactylorhiza

Project description:Dactylorhiza Transcriptome or Gene expression

| PRJNA317244 | ENA

Daucus carota

Project description:Plastid genome assemblies of the genus Daucus and related genera

| PRJNA340470 | ENA

Redefining Humicola sensu stricto and related genera in the Chaetomiaceae

Project description:Redefining Humicola sensu stricto and related genera in the Chaetomiaceae

| PRJEB25872 | ENA