Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil metagenome

ABSTRACT: Alpine Paleosol Metagenome

PROVIDER: PRJNA490486 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7822550_1.fastq.gz	Fastqsanger.gz
	SRR7822550_2.fastq.gz	Fastqsanger.gz
	SRR7822551_1.fastq.gz	Fastqsanger.gz
	SRR7822551_2.fastq.gz	Fastqsanger.gz
	SRR7822542_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 30

Similar Datasets

soil metagenome

Project description:Alpine soil eukaryote Metagenome

| PRJNA261749 | ENA

soil metagenome

Project description:Alpine soil archaea Metagenome

| PRJNA261662 | ENA

Metagenomic analysis revealed the microbial-mediated soil organic carbon loss under the degeneration succession in alpine meadow

Project description:Land cover change has long been recognized that marked effect the amount of soil organic carbon. However, little is known about microbial-mediated effect processes and mechanism on soil organic carbon. In this study, the soil samples in a degenerated succession from alpine meadow to alpine steppe meadow in Qinghai-Tibetan Plateau degenerated, were analyzed by using GeoChip functional gene arrays.

2017-01-05 | GSE93158 | GEO

Alpine soil transplantation metagenome

Project description:Alpine soil transplantation metagenome

| PRJNA1142418 | ENA

soil metagenome

Project description:alpine meadow soil Targeted Locus (Loci)

| PRJNA310048 | ENA

Soil metagenome

Project description:Soil metagenome

| OEX00028456 | NODE

soil metagenome

Project description:Soil microbial community in a Tibetan alpine meadow

| PRJDB7798 | ENA

Metagenome-Assembled Genomes from Amazonian Soil Microbial Consortia.

Project description:Here, we report 17 metagenome-assembled genomes (MAGs) recovered from microbial consortia of forest and pasture soils in the Brazilian Eastern Amazon. The bacterial MAGs have the potential to act in important ecological processes, including carbohydrate degradation and sulfur and nitrogen cycling.

| S-EPMC9670897 | biostudies-literature

Prospecting for novel biocatalysts in a soil metagenome.

Project description:The metagenomes of complex microbial communities are rich sources of novel biocatalysts. We exploited the metagenome of a mixed microbial population for isolation of more than 15 different genes encoding novel biocatalysts by using a combined cultivation and direct cloning strategy. A 16S rRNA sequence analysis revealed the presence of hitherto uncultured microbes closely related to the genera Pseudomonas, Agrobacterium, Xanthomonas, Microbulbifer, and Janthinobacterium. Total genomic DNA from this bacterial community was used to construct cosmid DNA libraries, which were functionally searched for novel enzymes of biotechnological value. Our searches in combination with cosmid sequencing resulted in identification of four clones encoding 12 putative agarase genes, most of which were organized in clusters consisting of two or three genes. Interestingly, nine of these agarase genes probably originated from gene duplications. Furthermore, we identified by DNA sequencing several other biocatalyst-encoding genes, including genes encoding a putative stereoselective amidase (amiA), two cellulases (gnuB and uvs080), an alpha-amylase (amyA), a 1,4-alpha-glucan branching enzyme (amyB), and two pectate lyases (pelA and uvs119). Also, a conserved cluster of two lipase genes was identified, which was linked to genes encoding a type I secretion system. The novel gene aguB was overexpressed in Escherichia coli, and the enzyme activities were determined. Finally, we describe more than 162 kb of DNA sequence that provides a strong platform for further characterization of this microbial consortium.

| S-EPMC201203 | biostudies-literature

soil metagenome

Project description:Prokaryotic communities in Tibetan alpine meadow soils in 2021

| PRJNA1058503 | ENA