Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis [RNA-Seq]

ABSTRACT: small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis [RNA-Seq]

PROVIDER: PRJNA493073 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7900240_1.fastq.gz	Fastqsanger.gz
	SRR7900240_2.fastq.gz	Fastqsanger.gz
	SRR7900241_1.fastq.gz	Fastqsanger.gz
	SRR7900241_2.fastq.gz	Fastqsanger.gz
	SRR7900242_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis [RNA-Seq]

Project description:We report the role of sRNAs populations during the induction of callus tissues from VS-535 maize embryos displaying contrasting in vitro embryogenic potential; characterized through Next-generation sequencing (NGS). We conclude that the Embryogenic Response during Maize Somatic Embryogenesis induction is closely related to sRNAs regulation and depends on the developmental stage of the explant.

2019-10-21 | GSE120435 | GEO

small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis

Project description:small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis

| PRJNA493070 | ENA

small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis [smRNA-Seq]

2019-10-21 | GSE120436 | GEO

small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis [smRNA-Seq]

Project description:small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis [smRNA-Seq]

| PRJNA493072 | ENA

embryogenesis col0-somatic embryogenesis

Project description:gnp07_regeneome_embryogenesis - embryogenesis col0 - Identify genes involved in somatic embryogenesis - compare embryogenic areas of a callus with undifferenciate area in the same callus

2012-06-01 | GSE30425 | GEO

embryogenesis ws-somatic embryogenesis

Project description:gnp07_regeneome_embryogenesis - embryogenesis ws - Identify genes involved in somatic embryogenesis - To compare embryogenic areas of a callus with undifferenciate area in the same callus

2012-06-01 | GSE30383 | GEO

embryogenesis col0-somatic embryogenesis

2012-05-31 | E-GEOD-30425 | biostudies-arrayexpress

embryogenesis ws-somatic embryogenesis

2012-05-31 | E-GEOD-30383 | biostudies-arrayexpress

embryogenesis ws-somatic embryogenesis

2013-04-11 | E-GEOD-45940 | biostudies-arrayexpress

Uncover small RNAs in citrus somatic embryogenesis

Project description:To uncover the involvement of miRNAs and siRNAs in somatic embryogenesis of the perennial woody crop citrus, we carried out high-throughput (Illumina) sequencing (HTS) of sRNAs and RNA degradome tags in non-embryogenic and embryogenic tissue of Valencia sweet orange. A total of 191 stem-loop structures were identified, emanating 50 known and 45 novel miRNAs, 130 miniature inverted-repeat transposable elements (MITEs) derived small interfering RNAs (siRNAs) and 94 other siRNAs. Combining with the result of degradome sequencing, a total of 235 phased siRNAs (phasiRNAs), and 195 cleaved target genes were identified for miRNAs/siRNAs.

2015-01-01 | GSE53064 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data