Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Next Generation Sequencing Analyzes Transcriptome after TMEM126A overexpression and knockdown

ABSTRACT: Next Generation Sequencing Analyzes Transcriptome after TMEM126A overexpression and knockdown

PROVIDER: PRJNA493103 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR7902430_1.fastq.gz	Fastqsanger.gz
	SRR7902430_2.fastq.gz	Fastqsanger.gz
	SRR7902431_1.fastq.gz	Fastqsanger.gz
	SRR7902431_2.fastq.gz	Fastqsanger.gz
	SRR7902428_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Next Generation Sequencing Analyzes Transcriptome after TMEM126A overexpression and knockdown

Project description:Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to identify the differential expression genes after TMEM126A overexpression or knockdown. Methods:Total cell mRNA profiles of TMEM126A-knockdown MDA-MB-231 cells (sh-NC vs shT126A) and TMEM126A-overexpression MCF10-Ca1a cells(pCDH vs T126A) were generated by deep sequencing, using Illumina HiSeq 2500. The sequence reads that passed quality filters were analyzed at the gene-level quantification, analysis of differentially expressed genes (DEGs), cluster analysis, GO and KEGG enrichment and qRT–PCR validation was performed using SYBR Green assays. Conclusions: Our study represents the first detailed analysis of TMEM126A overexpression and knockdown transcriptomes, with 2 cell lines, generated by RNA-seq technology. Our results show that NGS offers a comprehensive information for the downstream molecular mechanism.

2018-09-26 | GSE120468 | GEO

Next-Generation Sequencing of Usp7 Overexpression and Knockdown Female Germline Stem Cells (FGSCs) Transcriptomes

Project description:Next-Generation Sequencing of Usp7 Overexpression and Knockdown Female Germline Stem Cells (FGSCs) Transcriptomes

| PRJNA650241 | ENA

Next generation sequencing following CUX1 knockdown in erythroblasts

Project description:Next generation sequencing following CUX1 knockdown in erythroblasts

| PRJNA752767 | ENA

Next Generation Sequencing identifies differential genes regulated by FTSJ1 overexpression

Project description:Next Generation Sequencing identifies differential genes regulated by FTSJ1 overexpression

| PRJNA611060 | ENA

Next Generation Sequencing of Ctrl and K562 DROSHA knockdown cells

Project description:Next Generation Sequencing of Ctrl and K562 DROSHA knockdown cells

| PRJNA674591 | ENA

Next-Generation Sequencing of Usp7 Overexpression and Knockdown Female Germline Stem Cells (FGSCs) Transcriptomes

Project description:Next-generation sequencing (NGS) was performed to analyze the usp7 effects on FGSCs.

2023-07-17 | GSE155548 | GEO

Next Generation Sequencing Analysis of control and knockdown of hnRNPU in RKO cells

Project description:We knockdown the control and the hnRNPU gene in the RKO cells, then extracted the total RNAs and performed the next generation sequencing. By comparing sequencing data from control and knockdown of hnRNPU cells,we profield the downstream targets of the hnRNPU gene.

2022-12-10 | GSE141771 | GEO

Next Generation Sequencing of Total RNA of Senescent WI38 Human Fibroblast with and without knockdown of G3BP1

Project description:Next Generation Sequencing of Total RNA of Senescent WI38 Human Fibroblast with and without knockdown of G3BP1

2020-06-04 | GSE151745 | GEO

Next generation sequencing on knockdown of AC093323.3 in lung cancer cells

Project description:Next generation sequencing on knockdown of AC093323.3 in lung cancer cells

| PRJNA475690 | ENA

Next Generation Sequencing Facilitates Quantitative Analysis of Control and H3.3 Knockdown neural stem cell Transcriptomes

Project description:Next-generation sequencing (NGS) has revolutionized systems-based analysis of gene expression. The goals of this study are to compare the different transcripts between control or Histone H3.3 knockdown in the neural stem cells.

2016-12-22 | GSE92720 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data