Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Dynamic landscapes and regulome of mRNA structure during zebrafish early embryogenesis

ABSTRACT: Dynamic landscapes and regulome of mRNA structure during zebrafish early embryogenesis

PROVIDER: PRJNA494251 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10434659_1.fastq.gz	Fastqsanger.gz
	SRR10434659_2.fastq.gz	Fastqsanger.gz
	SRR10434660_1.fastq.gz	Fastqsanger.gz
	SRR10434660_2.fastq.gz	Fastqsanger.gz
	SRR10434661_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 60

Similar Datasets

Dynamic landscapes and regulome of mRNA structure during zebrafish early embryogenesis

Project description:We resolved the RNA secondary structure during zebrafish early embryogenesis based on in vivo click selective 2'-hydroxyl acylation and profiling experiment (icSHAPE). We analyzed the RNA structure dynamics among different development stages. Also, we studied which factors regulate maternal gene decay by RNA structure switch.

2020-04-14 | GSE120724 | GEO

Dynamic 3D chromosomal landscapes in acute leukemia

Project description:Dynamic 3D chromosomal landscapes in acute leukemia

| PRJNA476370 | ENA

Dynamic enhancer landscapes in human craniofacial development

Project description:Dynamic enhancer landscapes in human craniofacial development

| PRJNA987710 | ENA

The Dynamic Proteome in Arabidopsis Thaliana Early Embryogenesis

Project description:The Dynamic Proteome in Arabidopsis Thaliana Early Embryogenesis

| PRJNA810963 | ENA

Dynamic 3D chromosomal landscapes in acute leukemia [HiChIP]

Project description:Dynamic 3D chromosomal landscapes in acute leukemia [HiChIP]

| PRJNA556355 | ENA

Dynamic landscapes of H3K27ac in mouse preimplantation embryos

Project description:Dynamic landscapes of H3K27ac in mouse preimplantation embryos

| PRJNA854175 | ENA

Dynamic 3D chromosomal landscapes in acute leukemia [WGS]

Project description:Dynamic 3D chromosomal landscapes in acute leukemia [WGS]

| PRJNA579903 | ENA

Dynamic Transcriptional and Chromatin Accessibility Landscape of Medaka Embryogenesis

Project description:Dynamic Transcriptional and Chromatin Accessibility Landscape of Medaka Embryogenesis

| PRJNA560968 | ENA

Single-nucleus chromatin landscapes during zebrafish early embryogenesis.

Project description:Vertebrate embryogenesis is a remarkable process, during which numerous cell types of different lineages arise within a short time frame. An overwhelming challenge to understand this process is the lack of dynamic chromatin accessibility information to correlate cis-regulatory elements (CREs) and gene expression within the hierarchy of cell fate decisions. Here, we employed single-nucleus ATAC-seq to generate a chromatin accessibility dataset on the first day of zebrafish embryogenesis, including 3.3 hpf, 5.25 hpf, 6 hpf, 10 hpf, 12 hpf, 18 hpf and 24 hpf, obtained 51,620 high-quality nuclei and 23 clusters. Furthermore, by integrating snATAC-seq data with single-cell RNA-seq data, we described the dynamics of chromatin accessibility and gene expression across developmental time points, which validates the accuracy of the chromatin landscape data. Together, our data could serve as a fundamental resource for revealing the epigenetic regulatory mechanisms of zebrafish embryogenesis.

| S-EPMC10356945 | biostudies-literature

Dynamic 3D chromosomal landscapes in acute leukemia [Hi-C]

Project description:Dynamic 3D chromosomal landscapes in acute leukemia [Hi-C]

| PRJNA556356 | ENA