Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mycobacteroides abscessus subsp. massiliense strain:Myco1poa

ABSTRACT: Mycobacteroides abscessus subsp. massiliense strain:Myco1poa Genome sequencing and assembly

PROVIDER: PRJNA495829 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other

Items per page:

1 - 1 of 1

Similar Datasets

Mycobacteroides abscessus subsp. massiliense

Project description:Mycobacteroides abscessus subsp. massiliense genome resequencing

| PRJNA691364 | ENA

Mycobacteroides abscessus subsp. massiliense

Project description:Mycobacteroides abscessus subsp. massiliense Genome sequencing and assembly

| PRJNA672126 | ENA

Mycobacteroides abscessus subsp. massiliense strain:GD01B

Project description:Mycobacteroides abscessus subsp. massiliense strain:GD01B Genome sequencing

| PRJNA521972 | ENA

Mycobacteroides abscessus subsp. massiliense strain:GD01A

Project description:Mycobacteroides abscessus subsp. massiliense strain:GD01A Genome sequencing

| PRJNA521964 | ENA

Mycobacteroides abscessus subsp. massiliense strain:381

Project description:Mycobacteroides abscessus subsp. massiliense strain:381 Genome sequencing and assembly

| PRJNA392077 | ENA

Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300

Project description:Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300 Genome sequencing

| PRJNA217220 | ENA

Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300

Project description:Mycobacteroides abscessus subsp. massiliense CCUG 48898 = JCM 15300 Genome sequencing and assembly

| PRJNA73693 | ENA

Mycobacteroides abscessus subsp. massiliense strain:SIEW/TupaiaGlis/UNM/2023

Project description:Mycobacteroides abscessus subsp. massiliense strain:SIEW/TupaiaGlis/UNM/2023 Genome sequencing

| PRJNA1119049 | ENA

New rapid scheme for distinguishing subspecies of the Mycobacterium abscessus group and identification of Mycobacterium massiliense with inducible clarithromycin resistance

Project description:Mycobacterium abscessus [M. abscessus (sensu lato) or M. abscessus group] comprises three closely related taxa with taxonomic status under revision: M. abscessus sensu stricto, M. bolletii and M. massiliense. We describe here a simple, robust and cost effective PCR-based method for distinguishing among M. abscessus, M. massiliense and bolletii. Based on the M. abscessus ATCC 19977T genome, discriminatory regions were identified between M. abscessus and M. massiliense from array-based comparative genomic hybridization. A typing scheme using PCR primers designed for four of these locations was applied to 46 well-characterized clinical isolates comprising 29 M. abscessus, 15 M. massiliense and 2 M. bolletii previously identified by multi-target sequencing. Interestingly, 2 isolates unequivocally identified as M. massiliense were shown to have a full length erm(41) instead of the expected gene deletion and showed inducible clarithromycin resistance after 14 days. We propose using this PCR-based typing scheme combined with erm(41) PCR for a straightforward identification of M. abscessus, M. massiliense and M. bolletii and assessment of inducible clarithromycin resistance. This method can be easily implemented into a routine workflow providing subspecies level identification within 24 hours of isolation of M. abscessus group. Two-color CGH with 4 independent Mycobacterium clinical isolates and the M massiliense type strain (CCUG 48898) labeled with Cy3 were cohybridized with the M abscessus type strain (ATCC 19977) labeled with Cy5 on a tiling array designed against the M abscessus type strain

2013-07-17 | E-GEOD-43629 | biostudies-arrayexpress

Mycobacteroides abscessus subsp. abscessus

Project description:Mycobacteroides abscessus subsp. abscessus Genome sequencing and assembly

| PRJNA513478 | ENA