Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Solanaceae

ABSTRACT: Resistance gene enrichment sequencing (RenSeq) of Solanaceae

PROVIDER: PRJNA496490 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR10302358_subreads.fastq.gz	Fastqsanger.gz
	SRR10302359_subreads.fastq.gz	Fastqsanger.gz
	SRR10302360_subreads.fastq.gz	Fastqsanger.gz
	SRR10302361_subreads.fastq.gz	Fastqsanger.gz
	SRR10302362_subreads.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 19

Similar Datasets

Project description:Resistance gene enrichment sequencing (RenSeq) of Solanaceae

| PRJNA795506 | ENA

Solanaceae

Project description:Solanaceae Genome sequencing

| PRJNA254702 | ENA

Solanaceae comparative gene expression profiling

Project description:Six different Solanaceae species, Potato (Solanum tubersosum), Tomato (Lycopersicum esculentum), Pepper (Capsicum annuum), Tobacco (Nicotiana tabaccum), Petunia and Nicotiana benthiamana were grown at 25C, 16h light and 8h darkness. Mature leaves were harvested after 4-6 weeks. RNA was isolated using Qiagen RNeasy. Tomato, pepper, petunia, tobacco and N. benthamiana samples were hybridized against potato samples. Keywords: Solanaceae comparative gene expression profiling

2005-10-03 | GSE3380 | GEO

Solanaceae

Project description:Solanaceae Pericarp Transcriptomes

| PRJNA646747 | ENA

Solanaceae species

Project description:Solanaceae genome sequencing and assembly

| PRJNA839598 | ENA

Solanaceae

Project description:Solanaceae Trichome RNA-seq analysis

| PRJNA263038 | ENA

Solanaceae

Project description:Exploration of Solanaceae pathogen recognition genes rich regions

| PRJNA323537 | ENA

Solanaceae comparative gene expression profiling

Project description:Solanaceae comparative gene expression profiling

| PRJNA101167 | ENA

Solanaceae comparative gene expression profiling

Project description:Solanaceae comparative gene expression profiling

| PRJNA93511 | ENA

Genome-wide comparative analysis in Solanaceae plants reveals evolution of novel miRNAs targeting defense genes in Capsicum spp.

Project description:Background: MicroRNAs (miRNAs) play roles in various biological processes including growth, development, and defense in plants. Recent studies revealed that some plant miRNAs could produce secondary small interfering RNAs (siRNAs) such as phased, secondary siRNAs (phasiRNAs) and they regulate cascade of gene expression. Results: We performed genome-wide comparative analysis of miRNAs and their targets in Solanaceae plants in an evolutionary perspective. miRNAs were mapped onto 12 chromosomes and microsynteny analysis, based on miRNAs and their flanking genes, revealed about 86% of conserved miRNAs in pepper maintained synteny with those of tomato or potato. Degradome analysis revealed that many of genes related to transcription or defense response are regulated by miRNAs in Solanaceae plants. We found several miRNAs in pepper targeting a number of genes encoding nucleotide-binding and leucine rich repeat (NLR) or receptor-like protein (RLP), known as major players in defense responses. In addition, resistance-related miRNAs trigger phasiRNA production indicating amplification of regulation of the disease-resistant gene families. Among them, specifically evolved miRNAs in pepper, can-miR-n033a and can-miR-n026, targets many NLRs and RLPs in an expanded subgroup in pepper, respectively. Conclusions: Taken together, miRNAs might be generated and evolved to regulate diverse genes involved in plant immunity in Solanaceae. This study provides an insight into possible co-evolution between resistance-related miRNAs and defense genes in pepper.

2018-07-18 | GSE102781 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data