Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

[Curtobacterium] plantarum strain:LMG 16222

ABSTRACT: [Curtobacterium] plantarum strain:LMG 16222 Genome sequencing and assembly

PROVIDER: PRJNA498371 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	RHDS01.dat.gz	Other
	RHDS01.fasta.gz	Fasta.gz
	RHDS01.master.dat	Other
	SRR8109043_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

[Curtobacterium] plantarum

Project description:[Curtobacterium] plantarum overview

| PRJNA709887 | ENA

[Curtobacterium] plantarum strain:CC49

Project description:Curtobacterium plantarum CC49 genome sequencing

| PRJNA709421 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Paenibacillus plantarum strain:LMG 31461

Project description:Paenibacillus plantarum strain:LMG 31461 Genome sequencing and assembly

| PRJNA578275 | ENA

Curtobacterium sp. PhB136 isolate:LMG 30440

Project description:Curtobacterium sp. PhB136 isolate:LMG 30440 Genome sequencing and assembly

| PRJNA501349 | ENA

Curtobacterium sp. PhB134 isolate:LMG 30438

Project description:Curtobacterium sp. PhB134 isolate:LMG 30438 Genome sequencing and assembly

| PRJNA501348 | ENA

Curtobacterium sp. PhB190 isolate:LMG 30441

Project description:Curtobacterium sp. PhB190 isolate:LMG 30441 Genome sequencing and assembly

| PRJNA501369 | ENA

Curtobacterium sp. PhB78 isolate:LMG 30439

Project description:Curtobacterium sp. PhB78 isolate:LMG 30439 Genome sequencing and assembly

| PRJNA501375 | ENA

Curtobacterium oceanosedimentum strain:NS263

Project description:Curtobacterium oceanosedimentum strain:NS263 Genome sequencing and assembly

| PRJNA278203 | ENA

Curtobacterium flaccumfaciens strain:SHGH

Project description:Curtobacterium flaccumfaciens strain:SHGH Genome sequencing and assembly

| PRJNA995717 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data