Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Venturia inaequalis

ABSTRACT: Venturia inaequalis Genome sequencing and assembly

PROVIDER: PRJNA504484 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	VXCB01.dat.gz	Other
	VXCB01.fasta.gz	Fasta.gz
	VXCB01.master.dat	Other
	WNWQ01.dat.gz	Other

Items per page:

1 - 5 of 13

Similar Datasets

Venturia inaequalis

Project description:Venturia inaequalis Genome sequencing and assembly

| PRJNA261633 | ENA

Venturia inaequalis

Project description:Venturia inaequalis Genome sequencing and assembly

| PRJNA354841 | ENA

Venturia inaequalis

Project description:Venturia inaequalis overview

| PRJNA484526 | ENA

Venturia inaequalis

Project description:Venturia inaequalis Map

| PRJNA817384 | ENA

Modulation of apple leaf transcriptome by QTLs and infection by Venturia inaequalis

Project description:Induction of whole genome gene expression level changes in leaves of grafted apple genotypes exhibiting contrasted QTL architecture (from one to a combination of three QTL) after the inoculation of the pathogenic fungus Venturia inaequalis

2024-02-28 | GSE250309 | GEO

Venturia inaequalis

Project description:Venturia inaequalis Raw sequence reads

| PRJNA682916 | ENA

Venturia inaequalis

Project description:Venturia inaequalis Raw sequence reads

| PRJNA909760 | ENA

Venturia inaequalis

Project description:Venturia inaequalis Raw sequence reads

| PRJNA961780 | ENA

Venturia inaequalis strain:3.2

Project description:Venturia inaequalis strain:3.2 Raw sequence reads

| PRJNA693128 | ENA

Time series transcriptome of Venturia inaequalis (apple scab) infecting Malus domestica (apple)

Project description:V. inaequalis causes apple scab disease, the most economically important disease of apples. In this study, we generated a comprehensive RNA-seq transcriptome of V. inaequalis during host colonization of apple, with six in planta time points (12hpi, 24hpi, 2dpi, 3dpi, 5dpi, 7dpi) and one in culture reference (fungus grown on cellophane membranes overlaying potato dextrose agar). Analysis of this transcriptome identified five in planta gene expression clusters or waves corresponding to three specific infection stages: early, mid and mid-late infection of subcuticular biotrophic host-colonization. In our analysis we focus on general fungal nutrition (plant cell wall degrading enzymes and transporters) as well as effectors (proteinaceous effectors and secondary metabolites). Early infection was characterized by the expression of genes that encode plant cell wall-degrading enzymes (PCWDEs) and proteins associated with oxidative stress responses. Mid-late infection was characterized by genes that encode PCWDEs and effector candidates (ECs).

2022-03-14 | GSE198244 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data