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Selective roles of vertebrate PCF11 in premature and full-length transcript termination (chromatin-bound RNA-seq)

ABSTRACT: Selective roles of vertebrate PCF11 in premature and full-length transcript termination (chromatin-bound RNA-seq)

PROVIDER: PRJNA506046 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR8207780_1.fastq.gz	Fastqsanger.gz
	SRR8207780_2.fastq.gz	Fastqsanger.gz
	SRR8207790_1.fastq.gz	Fastqsanger.gz
	SRR8207790_2.fastq.gz	Fastqsanger.gz
	SRR8207800_1.fastq.gz	Fastqsanger.gz

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Selective roles of vertebrate PCF11 in premature and full-length transcript termination (chromatin-bound RNA-seq)

Project description:The pervasive nature of RNA polymerase II (Pol II) transcription requires efficient termination. A key player in this process is the cleavage and polyadenylation (CPA) factor PCF11, which directly binds to the Pol II C-terminal domain and dismantles elongating Pol II from DNA in vitro. We demonstrate that PCF11-mediated termination is essential for vertebrate development. A range of genomic analyses, including: mNET-seq, 3’ mRNA-seq, chromatin RNA-seq and ChIP-seq, reveals that PCF11 enhances transcription termination and stimulates early polyadenylation genome-wide. PCF11 binds preferentially between closely spaced genes, where it prevents transcriptional interference and downstream gene silencing. Notably, PCF11 is sub-stoichiometric to the CPA complex. Low levels of PCF11 are maintained by an auto-regulatory mechanism involving premature termination of its own transcript, and are important for normal development. Both in human cell culture and during zebrafish development, PCF11 selectively attenuates the expression of other transcriptional regulators by premature CPA and termination.

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Selective Roles of Vertebrate PCF11 in Premature and Full-Length Transcript Termination.

Project description:The pervasive nature of RNA polymerase II (Pol II) transcription requires efficient termination. A key player in this process is the cleavage and polyadenylation (CPA) factor PCF11, which directly binds to the Pol II C-terminal domain and dismantles elongating Pol II from DNA in vitro. We demonstrate that PCF11-mediated termination is essential for vertebrate development. A range of genomic analyses, including mNET-seq, 3' mRNA-seq, chromatin RNA-seq, and ChIP-seq, reveals that PCF11 enhances transcription termination and stimulates early polyadenylation genome-wide. PCF11 binds preferentially between closely spaced genes, where it prevents transcriptional interference and consequent gene downregulation. Notably, PCF11 is sub-stoichiometric to the CPA complex. Low levels of PCF11 are maintained by an auto-regulatory mechanism involving premature termination of its own transcript and are important for normal development. Both in human cell culture and during zebrafish development, PCF11 selectively attenuates the expression of other transcriptional regulators by premature CPA and termination.

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